RNA id: TCONS_00030918


Basic Information

Item Value
RNA id TCONS_00030918
length 1688
lncRNA type antisense_over
GC content 0.43
exon number 3
gene id XLOC_015461
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 25130523 ~ 25137789 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGTCTGTGTTTTATAAAGCGATAGTTGCGTGAAGATGTAGGCCACGGCGTACACGCAGTTTTATTAACCTCGGTTTTTGTTTTCAGCGTTCTGGCGTCGTGCGCTATTAGCTACTGTAACTTATGTTTCTACTCAAATTAAACGAAACTCTTGGAAACTAACATTGTTTACCTGCAAACATTTAACGGAAAACATGTGAGGAGGGATGTTCAGTCGACATTGATGTTCCTCAGAAAATTTACCATCAAGGTCTATTGCAAATTCTTACCAAATATTGCCTTCCACACCATCGTCCTGTCGACAAATGAGGTCTACAAATGTTTGTCAAGCCAAGCGATATAATTCTGCACTGCATTCACTCCCACAGAGAAGTAGCAGGGCCAGAAAGCAAAGCTTACACAGCCATGAAATCCATCTTGATAATGGTCATTAGTGACAGAGACGCCTGCCAGCTCCAACCTGCGGGCGTACATCATCCCATCATCCCTCAAAACATCATGCTCACCAGTCATAATATAAGCACGTGGCGCCATACGCAAAACCTCATCCTCCGCAAGTAACGGAGAGGCTCTGGAATCCAGTAAACCTGGAACATCACTTAAGATATTGGGAGATCCAGTCACTGGAAAAAcaggtttaaaatgttttcttatttcttttgGTAGAAGATTGGTCCAGTCCAGCTTTGCACGATTCTGGGACAACAGATTTTGGTCTTGGGCTGTGTGGTTGTTCATCATAATAGAGTGTGCAAGTTCAGGGTCAGCGCCCAGGTACTCCAACCAGAAACGAGCCATTAGTCTGCGGTATAGGATGGGGACATTATGGTTCTGCTGATAGGAAGCTGTGTTGAAGTCGAGTGCCTGAAGGACTGGGTAAATCAACACCTGCAGCTTGAATTTTGCTGAGagaatcatcACTTGCGTGTGCAACAAACCAGAGGTATGACAACAGAGGAAgtaccattttttaaaaagaggtgCTCCCGGCAACCCGAGTTCGATTCTTGGCTTGAGGTTCCTTGCCATTTCTTGTTCCTCTCTCCCTGCTCCCAGTGCATTCATATCTTCAGTCTCCACTGTCCtctcaattaaaggtgaaaaaccacATGGCGAGCAAGAACAGAATCAGCTGTATGTCCTACATGTTGTTTACAGGGCTGTTTGCATGTTATGGTATGCTTATTAATCACAATTTCAGCAGTACTCTACGCCTACCACAAGGGTGCTGCTGGCAGTGGAAACACATGTCTGATCAGAATGATACCATATTGCACTGCACTGAACCATACTGTTCAGTGAAAAGGCATTAAACACACCGCCACTGGACGTGTTGTCTGGACTGACAAATCTTGCTTATCTGTCTTGCAATTTGATGGACGAGGCTGAGTTTGCTGGTTCCCAGGAGAACGATTATTGCTTGCCTGCCAAATGTAAGGTTTGATGGAGGGGATTATGGTGTGGGGCTGTATTTTATGGGATCCTTAGTTCCAGTGAAAGAAACTTTTAATGCTTCATCATACCAAGACATTCTGGCTAACTTATGACCATTATAAAGTGTTTTATCAGATGCTAAAGAGAAGCATCCAATATTGGGAAATTTACGTGTGAATGAAACCACGATCAACCTTGAATAACAATGAATTATTTGTAGTGTTGGTCATTTTGAATTGTATTTGTGCACTATTT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033263 lncRNA upstream 202769 24912293 ~ 24927754 (+) True XLOC_015456
TCONS_00033543 lncRNA upstream 223908 24903666 ~ 24906615 (+) True XLOC_015455
TCONS_00030903 lncRNA upstream 365935 24762638 ~ 24764588 (+) True XLOC_015450
TCONS_00033542 lncRNA upstream 409736 24716314 ~ 24720787 (+) True XLOC_015449
TCONS_00033541 lncRNA upstream 518455 24603292 ~ 24612068 (+) True XLOC_015446
TCONS_00030924 lncRNA downstream 177869 25315658 ~ 25382341 (+) False XLOC_015463
TCONS_00030930 lncRNA downstream 696306 25834095 ~ 25836832 (+) True XLOC_015465
TCONS_00033544 lncRNA downstream 1028789 26166578 ~ 26167419 (+) True XLOC_015470
TCONS_00030948 lncRNA downstream 1151513 26289302 ~ 26290690 (+) True XLOC_015474
TCONS_00030952 lncRNA downstream 1345108 26482897 ~ 26483391 (+) False XLOC_015476
TCONS_00030917 mRNA upstream 1114 25124498 ~ 25129409 (+) True XLOC_015460
TCONS_00030914 mRNA upstream 21936 25019387 ~ 25108587 (+) False XLOC_015459
TCONS_00030916 mRNA upstream 25040 25074849 ~ 25105483 (+) True XLOC_015459
TCONS_00030915 mRNA upstream 25558 25074849 ~ 25104965 (+) False XLOC_015459
TCONS_00030913 mRNA upstream 185704 24936766 ~ 24944819 (+) True XLOC_015458
TCONS_00030919 mRNA downstream 60859 25198648 ~ 25289828 (+) False XLOC_015462
TCONS_00030920 mRNA downstream 107294 25245083 ~ 25289828 (+) False XLOC_015462
TCONS_00030921 mRNA downstream 107364 25245153 ~ 25291181 (+) False XLOC_015462
TCONS_00030922 mRNA downstream 140318 25278107 ~ 25291181 (+) True XLOC_015462
TCONS_00030923 mRNA downstream 177802 25315591 ~ 25544850 (+) False XLOC_015463
TCONS_00030908 other upstream 284524 24842587 ~ 24845999 (+) True XLOC_015452
TCONS_00030897 other upstream 589758 24540047 ~ 24540765 (+) False XLOC_015445
TCONS_00030898 other upstream 589798 24540209 ~ 24540725 (+) True XLOC_015445
TCONS_00030891 other upstream 632682 24484289 ~ 24497841 (+) True XLOC_015443
TCONS_00030885 other upstream 779483 24348589 ~ 24351040 (+) True XLOC_015440
TCONS_00030940 other downstream 896386 26034175 ~ 26039606 (+) True XLOC_015468
TCONS_00030946 other downstream 1148676 26286465 ~ 26287505 (+) True XLOC_015473
TCONS_00030957 other downstream 1360745 26498534 ~ 26501294 (+) False XLOC_015477
TCONS_00030958 other downstream 1360772 26498561 ~ 26501275 (+) False XLOC_015477
TCONS_00030959 other downstream 1360773 26498562 ~ 26501305 (+) False XLOC_015477

Expression Profile

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