RNA id: TCONS_00033542


Basic Information

Item Value
RNA id TCONS_00033542
length 4474
lncRNA type intronic
GC content 0.33
exon number 1
gene id XLOC_015449
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 24716314 ~ 24720787 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTAAAAGTGATGTGTTaaaaatttacacaaaatatgtgTTAAACAGGTCGTAACACATTTTGTGTTACTACGAACACATTGTGTGTTAATATTGTGCTTAACTGTTTACACAATGACTgtgttaaacacatttaaacagtaTGTTggaatacaatgtatttttgcctgTAGTCAAATGGCACTGTGTTATGAgtttatgtagtttatttatcatgatggtaatataaaataagcatttgTGAGTATGTGGCTAAAAATTCTATATTTCGGGGTTTATACTGTGACTTTCTGCACGCGCATGCGCAGTGACGTTCTTTTTCAACTGACGCTCTCCCAGAGCTCTATCGGATAACGCACCTCTCTGCCTCAGGTGAGTGAAATTCATTAAAATTCGTCTACGATAGTAAATATTTCTTCCACTCTGCGTGAGAATGTTTTGTGTTAGTTGTCCAAGAagttatttttgttacttttattatgttttcatgTTTCGTACTCCTGATACACGGACTTGGCAACTCTGTCATGTAACATTAACTTTAGCCGCGCAAGCTAACGCATCTGGCGCGTCTTTTGTAAAGCTGCGTTGGCACTTGGCAGAATTGTTAATAATGAGTTACATATAAGGCGAAAGACTTACCCTAAATATGTACTGCATTTTGGTGTAAGAGTTGCCGTCACTTTAAAAAGCCTCTGCGTCTCTGACACTCGAGGTAACGCTACCGGATATAATTTATGCATTTAACCTTACGTTATTATCATAAGGTTATTTAATATATAACCTTATATGAAGCTCTGCGGCAGTTAGTTGGGTGCTTTGTACAGACACCAAATGGCGCCGAGGTGTGAGCAAATTCATAAACAATAGCTAAAATATGAAGATCTTTAATGTACTCAATTTTGCGCGCCATTTTGTGGTACCCTACTAGTCGCATACTAtttaaaagtgtactttttaTTGTCATACACAGTTACAGGTGTTTGTTTTCTCATTGTGCTGTATGAATTTCTCTCTTAGGAGATGGAAGTCGAGGAACAAATTACAGTCACTCTTAACACTTCTACACCGCGTTCTTGCAACTGTCTTCATAGATAGAAAGGAAATATGGAGAAAACTATTCACAGATGGCAATGTTGGAGATCTGATAGCCTTAGTCAAACTGGTCTCAACTATCTTTTGATTGAATATTGAAATTTGACAGATTTTCAAGTTCATTGACACTGATGTAAATGCAGGAGTAAAGGAGCTTGGCAAAtttcaaatatattatattgCAAGCTACACCCCGGACTCATTAGAAAGAAGTGTGCACTCATTACAggtaaaacattaatatatttatccctttatattactatagataaacgtaaacatttaaataaataaaatgttttgggaTTTCTTAGTGTCCTTTAACAGATTCAACTCAGACTGGCAACACAACTAGTTTGCTGACGCTGCTTGAAGAAAAGCCTCTTCAATCCTGAGAGAACATGAACACTGTCAAAAAGTTGCTGTCAGTGTCCTTGTAGAGAAACATGGATTGTGAGTATGTGGTTTGTTTATTCCATGTAAGATGTATTTatttgcaaattaaataaattacatttatttaaataagttatatattaaaataaattctacatttaaaaaatatttcaaataaatacatttaacaatttaTCCCAATCAATTCTGAAGTACCACTGTTTagtcaatttttttatgtttttcaatGTTTGTGTAAAAGCAATTTATgcaactgtatttgttttttacttttttagctATCCTTCTGGTACAGAAAAGCTGGTACTAGCAAAAGAGATTCTGTCATTGTTCCCCTCAGGTGCTCTTTGGTGAAAATGAGGGACATGTAAGaatgtttttacattataaacTGAATTTATTAGGAATGTGTATATAAGTTGCTCATTTATTTGACTTTCATTagttctgtttttacattactaatgtcaggaggatttttttttttgctaggccATCACACAGTCAGACGGAAGCTTCAACAGAGCCAGTGGGTGTACAGTTTAAAACATCATCATTGTACACCGCAACCTTCTTCACCAAGTCCAGATGAAACCGTGAAACCGTACCAAGTGAGTGGTTGTCTCTGATAAAGGAGATGCGACCATCACCAGACAATTTATCATCAATAAAGACTGCAATCAATCAAACCTTCAGTTACAGAAAAAGATGGATAACAACAAAATCCCTTCAAAATCTCTTGCTGAAATCTTCAAGGACTATCCCAGATTTCTTGACATGCCAGCtttggtaatagacatgctcaaCTAAGACAGAACTTTAcacagacatttatttcataattgtaatattaatatttctttgtttctgatttctttctttctttaaagaTGGACATTGAATTTTCCAAGCTCACAGATGGGAACGAAGACTTGTTTATCCAGAAAAGGGAAGGGACGATAATTCCAGAACTCAAAGAAATAGCATCTTGGAGAAGAAAATTGACATCAGGCTCTTACTGAAGATGGCTGACAATCAGCATGATGGTAGTTTCAGCCAAAATATCTGTTGCATGTGCACACTTttctaaaaatagtttaaaagatAAAACTGTGAATATTAATATTCTATTAAAGATATTAATttctaatatattttgtttaaattcttATTTTGCATGTGACCTGAATCTTCACTTCAAGATGAGCTGTTAAACTGTAAAGATCCTTATTCATCTTCTTCCACCCACTGCCTCTGGGAGAAGTGTTGCTGGGAGTAAATGCTGTGTGACTTCTGCTGTGTCCTACCTGTTGGAGCAAGTGCCGGTATAGTTTTTATTGGTTTAGcttatgataaataaaatgtttctaatgcagcaacaTTTTCTTATGCTTTTTATTGTTTCATTCCTGAAGGCTGGTACCACCGTTACATCTTTGCTCACTGAATCCATGAAAGGGACCCTGAAGTCAGCTCAGCCGCAGTTGGTTTCTATTGGTTGTCTAGGACATGGATCCTTGTACGTGTACGTGTACTTGTAGCTGTGGCAAAGAATGACTCTTTTGCTCTTCCACTCGATCCTGAAAGCCTGACCTGTGCTGTAGACAGACTTTTCAAATTCTTCTGGCTGTGCAATCTTCAGTATCCATGCCAACTGtcttctgttttttctttttttttgagtatatatatatatatatatatatatatatatatatatatatatatatatgacctttCCTTGTCCCAGTCATCTTGCACACGATCAAAGGTCATGGAATTAATTGCTAAGGTGCAGTCTTGTACCTAATTGAAATAAGCATGTACACCTATCCAAAGtgtctttaaaatgattttgtaatTTGGCATTTAAGGGAAATGCATGCACTCTCTGATAGTCACAACCTAACTTTAATTTGTAGTCAAAATCGTTGCATATCATAATTTAAATTCCTTTTTAAAACATCTAAAcagatcattttaaaattaattcatgCCCTTCTGAAGAGTCAGGACACACAGGGAACGAGAGTTTTAAGAGTTAAGTATTTTGAtgaacatatttttttcttcagtgtcaTCAGAACAAATCGTTTTCTCTTTGCTTTGCTGTCTGGGGACTTAATAGATTACAGACCTCTAGACATTTTGTCATTTTGTGATCAGCAGTATGTATCTcctaaatacaaaatattgttttaaacatgTTAGTGATTgaaactttggtaacactttataataactacacactataaatcatttattaagcattagcaaatggtGAATTCATTAATTTGTAAAGCGTTAACTATACATTATAAGACATTAGCGgtttacaaatgctgtattcttgacttataagtaaatgtttaatgtgcttaataattgtacctTCACATTTTGCTTCTGATTATTTTTTCACTACTAAATTAAGgactgcattatttacaaaccatttgtatttgaAAGTATGAATTATAAAAGTACAATTGttaggcacattataaatgtgcttatacgTCAAGAAAACAGCCTTTGTAGTTGTATATAGAAACCACCTACTAATGTCTTATAATGTAGATTTAATGCTTAACAAACAGTGAATTAACTACTGtacttgctaatgcttaataaataatttatattgtgtCGTTACTATAAAGGGTTACCTAaatgtttgaagtgttttgactAGATTTGacaatgatttattttgttaagACAAGCACCTTACATGTGGGTGAATGTATAAACAGTGTGCTATGGTTATTTATTTCTTTCACTAGAGAATAATTTTGAAAATGGATATGTTTCAtacatatttgacattttattggcATGCGTAACAGATACGAGTTCAATTTAATGAATACTTTTATAAAGTGAGTTTTTATATTATGTACAATGAATTGCTGTAAAACATTTGAATGCATTTGGGAAAATTAAACAGTATGTGAACAGTG

Function

GO:

id name namespace
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001706 endoderm formation biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0016070 RNA metabolic process biological_process
GO:0035775 pronephric glomerulus morphogenesis biological_process
GO:0007492 endoderm development biological_process
GO:0007498 mesoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0072102 glomerulus morphogenesis biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0008152 metabolic process biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0048793 pronephros development biological_process
GO:0003401 axis elongation biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0035295 tube development biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0002068 glandular epithelial cell development biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0010470 regulation of gastrulation biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0007369 gastrulation biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0050789 regulation of biological process biological_process
GO:0039019 pronephric nephron development biological_process
GO:0050794 regulation of cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0060028 convergent extension involved in axis elongation biological_process
GO:0048389 intermediate mesoderm development biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0072045 convergent extension involved in nephron morphogenesis biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0003323 type B pancreatic cell development biological_process
GO:0009790 embryo development biological_process
GO:0043034 costamere cellular_component
GO:0005634 nucleus cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033541 lncRNA upstream 104246 24603292 ~ 24612068 (+) True XLOC_015446
TCONS_00030894 lncRNA upstream 206616 24507770 ~ 24509698 (+) False XLOC_015444
TCONS_00033540 lncRNA upstream 228160 24484273 ~ 24488154 (+) False XLOC_015443
TCONS_00030890 lncRNA upstream 228160 24484275 ~ 24488154 (+) False XLOC_015443
TCONS_00030881 lncRNA upstream 455018 24261217 ~ 24261296 (+) True XLOC_015437
TCONS_00030903 lncRNA downstream 41851 24762638 ~ 24764588 (+) True XLOC_015450
TCONS_00033543 lncRNA downstream 182879 24903666 ~ 24906615 (+) True XLOC_015455
TCONS_00033263 lncRNA downstream 191506 24912293 ~ 24927754 (+) True XLOC_015456
TCONS_00030918 lncRNA downstream 409736 25130523 ~ 25137789 (+) True XLOC_015461
TCONS_00030924 lncRNA downstream 594871 25315658 ~ 25382341 (+) False XLOC_015463
TCONS_00030899 mRNA upstream 32949 24638367 ~ 24683365 (+) True XLOC_015447
TCONS_00030896 mRNA upstream 173796 24536762 ~ 24542518 (+) False XLOC_015445
TCONS_00030892 mRNA upstream 206616 24507597 ~ 24509698 (+) False XLOC_015444
TCONS_00030893 mRNA upstream 206618 24507770 ~ 24509696 (+) False XLOC_015444
TCONS_00030895 mRNA upstream 206618 24507777 ~ 24509696 (+) True XLOC_015444
TCONS_00030901 mRNA downstream 1984 24722771 ~ 24755347 (+) True XLOC_015448
TCONS_00030902 mRNA downstream 41780 24762567 ~ 24767470 (+) False XLOC_015450
TCONS_00030904 mRNA downstream 49648 24770435 ~ 24778912 (+) True XLOC_015451
TCONS_00030905 mRNA downstream 60239 24781026 ~ 24843233 (+) False XLOC_015452
TCONS_00030906 mRNA downstream 65978 24786765 ~ 24866649 (+) False XLOC_015452
TCONS_00030897 other upstream 175549 24540047 ~ 24540765 (+) False XLOC_015445
TCONS_00030898 other upstream 175589 24540209 ~ 24540725 (+) True XLOC_015445
TCONS_00030891 other upstream 218473 24484289 ~ 24497841 (+) True XLOC_015443
TCONS_00030885 other upstream 365274 24348589 ~ 24351040 (+) True XLOC_015440
TCONS_00030870 other upstream 701371 24013250 ~ 24014943 (+) True XLOC_015433
TCONS_00030908 other downstream 121800 24842587 ~ 24845999 (+) True XLOC_015452
TCONS_00030940 other downstream 1313388 26034175 ~ 26039606 (+) True XLOC_015468
TCONS_00030946 other downstream 1565678 26286465 ~ 26287505 (+) True XLOC_015473
TCONS_00030957 other downstream 1777747 26498534 ~ 26501294 (+) False XLOC_015477
TCONS_00030958 other downstream 1777774 26498561 ~ 26501275 (+) False XLOC_015477

Expression Profile

//