RNA id: TCONS_00030895


Basic Information

Item Value
RNA id TCONS_00030895
length 369
RNA type mRNA
GC content 0.50
exon number 4
gene id XLOC_015444
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 24507597 ~ 24509698 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CATGGACGCCAGCCGCGTGCAGCCCATCAAGCTCGCCAgaGTTACAAAAGTGCTGGGAAGAACTGGCTCCCAGGGACAGTGTACCCAGGTGCGTGTTGAGTTCATGGATGACAGCAACCGATCAATCATCAGGAACGTGAAGGGCCCAGTCAGAGAAGGAGATGTGCTGACACTTCTGGAGTCTGAAAGAGAGGCCAGGAGACTTCGCTAGctttctgcaggttttaacagtttgtctgtttgtttctgCAGTGCACATGAAGAGCTGCAATGGCCAAAGCTGTACTCGTGGAGCAGATCAACACCAGCTCTACAGTTGGCAGTACTATACCATTTGGGTGCAGATTGAAATAAATTGACTTTGTGAAT

Function

GO:

id name namespace
GO:0000028 ribosomal small subunit assembly biological_process
GO:0006412 translation biological_process
GO:0030490 maturation of SSU-rRNA biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0098556 cytoplasmic side of rough endoplasmic reticulum membrane cellular_component
GO:0005783 endoplasmic reticulum cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0042788 polysomal ribosome cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03010 Ribosome
ko05171 Coronavirus disease - COVID-19
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-030131-2022 Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation; maturation of SSU-rRNA; and ribosomal small subunit assembly. Predicted to act upstream of or within translation. Predicted to be located in cytoplasmic side of rough endoplasmic reticulum membrane and polysomal ribosome. Predicted to be part of cytosolic small ribosomal subunit. Human ortholog(s) of this gene implicated in Diamond Blackfan anemia 15 with mandibulofacial dysostosis. Orthologous to human RPS28 (ribosomal protein S28).

Ensembl:

ensembl_id ENSDART00000052063

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033540 lncRNA upstream 19623 24484273 ~ 24488154 (+) False XLOC_015443
TCONS_00030890 lncRNA upstream 19623 24484275 ~ 24488154 (+) False XLOC_015443
TCONS_00030881 lncRNA upstream 246481 24261217 ~ 24261296 (+) True XLOC_015437
TCONS_00033539 lncRNA upstream 483329 24022798 ~ 24024448 (+) True XLOC_015434
TCONS_00033538 lncRNA upstream 567447 23936535 ~ 23940330 (+) True XLOC_015432
TCONS_00033541 lncRNA downstream 93596 24603292 ~ 24612068 (+) True XLOC_015446
TCONS_00033542 lncRNA downstream 206618 24716314 ~ 24720787 (+) True XLOC_015449
TCONS_00030903 lncRNA downstream 252942 24762638 ~ 24764588 (+) True XLOC_015450
TCONS_00033543 lncRNA downstream 393970 24903666 ~ 24906615 (+) True XLOC_015455
TCONS_00033263 lncRNA downstream 402597 24912293 ~ 24927754 (+) True XLOC_015456
TCONS_00030887 mRNA upstream 121395 24374305 ~ 24386382 (+) False XLOC_015442
TCONS_00030889 mRNA upstream 125736 24376373 ~ 24382041 (+) True XLOC_015442
TCONS_00030888 mRNA upstream 131168 24374669 ~ 24376609 (+) False XLOC_015442
TCONS_00030886 mRNA upstream 152453 24352497 ~ 24355324 (+) True XLOC_015441
TCONS_00030883 mRNA upstream 187594 24317465 ~ 24320183 (+) False XLOC_015439
TCONS_00030896 mRNA downstream 27066 24536762 ~ 24542518 (+) False XLOC_015445
TCONS_00030899 mRNA downstream 128671 24638367 ~ 24683365 (+) True XLOC_015447
TCONS_00030900 mRNA downstream 191226 24700922 ~ 24748375 (+) False XLOC_015448
TCONS_00030901 mRNA downstream 213075 24722771 ~ 24755347 (+) True XLOC_015448
TCONS_00030902 mRNA downstream 252871 24762567 ~ 24767470 (+) False XLOC_015450
TCONS_00030891 other upstream 9936 24484289 ~ 24497841 (+) True XLOC_015443
TCONS_00030885 other upstream 156737 24348589 ~ 24351040 (+) True XLOC_015440
TCONS_00030870 other upstream 492834 24013250 ~ 24014943 (+) True XLOC_015433
TCONS_00030864 other upstream 827788 23679873 ~ 23679989 (+) True XLOC_015426
TCONS_00030856 other upstream 1232996 23274332 ~ 23274781 (+) True XLOC_015415
TCONS_00030897 other downstream 30351 24540047 ~ 24540765 (+) False XLOC_015445
TCONS_00030898 other downstream 30513 24540209 ~ 24540725 (+) True XLOC_015445
TCONS_00030908 other downstream 332891 24842587 ~ 24845999 (+) True XLOC_015452
TCONS_00030940 other downstream 1524479 26034175 ~ 26039606 (+) True XLOC_015468
TCONS_00030946 other downstream 1776769 26286465 ~ 26287505 (+) True XLOC_015473

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU161906 False 407 TUCP 0.49 4 NC_053122.1 34400823 ~ 34404013 (-)