RNA id: TCONS_00030887


Basic Information

Item Value
RNA id TCONS_00030887
length 2912
RNA type mRNA
GC content 0.49
exon number 5
gene id XLOC_015442
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 24374305 ~ 24386382 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

acacacacacgcgctcgcTCACAGGCACGCGGCGCGCGCACTCTACTGGACACTGGCTCGCGCTCTCTTGTCCTCCTCAAGCCCGCGCGACTCTGCCACTTCTTAAAACAGGTCCTTATTTGGAAATAAACTTCCAAACTCATTACCCTTGGTGTGACTAAAGAAGCGGATCCAAAGAATGAATATGATCAGTCAAGGAGGCAAAGCAACATGTACAGCCCGCTGGCTAAAGAAGAAAGTtaactgacacagacacacacaagtgaCTCAGAACTCGTGTCTGAGCCTAAATGTGTCAGACGAAGCTGCGGACAATTACCAGATCCAGAGGCCTTCATATCTTCTCATTTTAGAACACGCAGCTGTCAAAAAAAGGGGTCAAGTGAAACTGTCTGTGCCGACAGCACGTTTGGGAGTATCATTCTTCCTCGGTTGTGCTGAGAACTAAGCGATGGCCATGGTGAGAGGGGGGTGGGGAGATCCCAACGGGGAAACAAATGGACTTGGTGACAAGGGTTACCTGAGGGGAGATGAAGATGACGGGTCACCGCAAGGAGGCGGCAGCGACATGGAGGCCGGTGAGGATGATAAGGGATGTGTGGTGGACTGTGTTGTCTGCGGCGACAAGTCCAGCGGGAAACACTATGGTGTGTTCACCTGTGAGGGCTGCAAGAGCTTCTTTAAACGAAGTGTCAGACGAAACCTTAACTACACCTGCAGATCAAACCGAGACTGCCAAATTGACCAGCATCATCGCAACCAGTGTCAATACTGCCGTTTAAAGAAGTGTTTCCGAGTGGGAATGCGTAAAGAAGCAGTTCAGCGTGGACGGATCCCACCTTCACATTCGAGCCTGAGCCCATCTACAACTCCAGTAGGCGGTAATGCCGGCGGTGGTGTGAGCGAGTTCTACAATGGGCAGCCGGTGTCCGAGCTCATCTCCCAGCTCCTGCGGGCAGAGCCTTACCCTAACAGCCGCTACAGCCACCAGTACAACCAGCAGATGCAAGGCGGTGGTGGCGGTGGATCTGGCATGGGCATCGACAGCATCTGTGAGCTCGCTGCCAGACTCCTGTTTAGCATCATCGAATGGGCCCGAAACATTCCGTACTTCCCCGAATTGCCAGTATCGGAGCAGGTGGCCTTGCTGCGGCTCAGCTGGAGCGAACTGTTTATTCTGAACGCAGCTCAATCTGCCCTGCCACTGCACATGGCCCCGCTGCTGGCCGCCGCAGGCTTCCACTCCTCACCCATGTCCGCGGAAAGGGTGGTGTCCTTCATGGACCAGGTGCGCGTCTTCCAGGACCAGGTGGAGAAGCTGACGCGTCTGCAGGTGGATTCGGCAGAGTACAGCTGTCTCAAGGCCATAGCGCTCTTCTCGCCAGATGCGTGTGGGCTGACAGATCCCGCTCATGTAGAAAGCCTGCAGGAGAAAGCTCAGGTGGCTCTTACCGAGTACGAGCGCATGCAGTACCCCGGGCAGCCCCAGCGTTTCGGACGGCTCCTGCTGCGACTGCCCGCTCTGAGGGCCGTGCCCGCCAGCCTCATCTCTCAGCTCTTCTTCATGCGGCTCGTGGGCAAAACGCCCATCGAGACACTCATCCGTGACATGCAGCTGTCTGGCAGCTCCATCAGTTGGCCGTATGCTCCTGGACAATAATCTTCATCACATGTGACCAGCCTGAACGGGAAGATCTTGGTctgacttgttttgtttttttatatccaCACATTTACATCTGATATTCAGTGTATTGCCTAATGCAACAGGGTCGCACTATGGAAATGGTGAATTGGGTATTATGTTGCAGATCGGTGAACTTCAACATGACTTGAAGTATTTGTTATCTGCCAACCAAAGGTAAGACGTGAGGTACCATTTTTTAAAGATTGTAATTAATTGGAAATGGGTTCAAACCCTAAAAGGCGAGATCTGACAGTTTGGTGTCAACAACACGAAGGTCACTTTGGACTGTTCCCGGAGGCCTGGGAAATCAAGTTCCCATCATGCTCCGCTCTGCCCTGTCCTTGTGCACCACAAAGCCTGAAGGAGGAGGAAGTAGACACGATGACATCCAAACAAACCAAACCCAAACAGTCTGAATTAGGACTAAGGCATTTGTTATGCCAACGAGAACTTGTATTTTTTAGCTCTTTTTACCCTTGTCAAAGCTAACGCATTTCTGAGGAGAGAGTGAAATTTGCAACTGATTATGTTGAATTAAGTATAGCTGCGGACTTTATTTGTACTTTGAGTTAAGGTACAGGCTCATCTCATCAAGAATGATTCATATTTTGGAGCGCACACCCTTCATTTGAGATAGATGACAGGTGAAGtagtcttgtttttttcttttcagacaGACACCAATGAATTTTCTTCTTAaaaaggtttcttttttttttttttttttttagttttttcagaCTTCCACTGGTAATGAAGTCCTATTATGAACGTCGACCAAAAGAAATACCTCTACAGTCTGTTGAGACTCTGTGTCATTCACGGCTGTGTCAGATTTTCTATGTACCAACATACTTGAGCTGCTCACTTTACACTAAAGAGGAGTGATTGGATCAATCTGTCTGTTATGTTTGTTTCTCGAAGGCCGTTTTCAGCAGGAAACCGGCTGTGGCTGTTTTGTCTTTCGTGGAGCATTGCTCTGGTGTGGCGTTTCACAGGTGACAGCATGTTGTATTGGCTCTTGTTGTGAGATGTCCGTTTTCTAGCCTTATCATACATCAGAATGACTAATATTACCTCATATTTAGGCCTTTAAAACATATCAGACGGTCTAATAGACATCAATGCATCAAATCGGCAACGTGTacagttttcattttaatatctTTGTCTTTTTAAATACTTGTGTATGACGGCTTGATTAAACAAAGTATCATACAACGAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0048856 anatomical structure development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4362 Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Predicted to be involved in anatomical structure development; cell differentiation; and negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in brain; retina; retinal inner nuclear layer; somite; and ventricular zone. Orthologous to human NR2F6 (nuclear receptor subfamily 2 group F member 6).

Ensembl:

ensembl_id ENSDART00000022379

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030881 lncRNA upstream 113009 24261217 ~ 24261296 (+) True XLOC_015437
TCONS_00033539 lncRNA upstream 349857 24022798 ~ 24024448 (+) True XLOC_015434
TCONS_00033538 lncRNA upstream 433975 23936535 ~ 23940330 (+) True XLOC_015432
TCONS_00033537 lncRNA upstream 594876 23772918 ~ 23779429 (+) True XLOC_015428
TCONS_00030862 lncRNA upstream 754082 23613106 ~ 23620223 (+) True XLOC_015424
TCONS_00033540 lncRNA downstream 97891 24484273 ~ 24488154 (+) False XLOC_015443
TCONS_00030890 lncRNA downstream 97893 24484275 ~ 24488154 (+) False XLOC_015443
TCONS_00030894 lncRNA downstream 121388 24507770 ~ 24509698 (+) False XLOC_015444
TCONS_00033541 lncRNA downstream 216910 24603292 ~ 24612068 (+) True XLOC_015446
TCONS_00033542 lncRNA downstream 329932 24716314 ~ 24720787 (+) True XLOC_015449
TCONS_00030886 mRNA upstream 18981 24352497 ~ 24355324 (+) True XLOC_015441
TCONS_00030883 mRNA upstream 54122 24317465 ~ 24320183 (+) False XLOC_015439
TCONS_00030884 mRNA upstream 54340 24317487 ~ 24319965 (+) True XLOC_015439
TCONS_00030882 mRNA upstream 65623 24304854 ~ 24308682 (+) True XLOC_015438
TCONS_00030879 mRNA upstream 154651 24199276 ~ 24219654 (+) False XLOC_015436
TCONS_00030892 mRNA downstream 121215 24507597 ~ 24509698 (+) False XLOC_015444
TCONS_00030893 mRNA downstream 121388 24507770 ~ 24509696 (+) False XLOC_015444
TCONS_00030895 mRNA downstream 121395 24507777 ~ 24509696 (+) True XLOC_015444
TCONS_00030896 mRNA downstream 150380 24536762 ~ 24542518 (+) False XLOC_015445
TCONS_00030899 mRNA downstream 251985 24638367 ~ 24683365 (+) True XLOC_015447
TCONS_00030885 other upstream 23265 24348589 ~ 24351040 (+) True XLOC_015440
TCONS_00030870 other upstream 359362 24013250 ~ 24014943 (+) True XLOC_015433
TCONS_00030864 other upstream 694316 23679873 ~ 23679989 (+) True XLOC_015426
TCONS_00030856 other upstream 1099524 23274332 ~ 23274781 (+) True XLOC_015415
TCONS_00030855 other upstream 1116408 23257777 ~ 23257897 (+) True XLOC_015416
TCONS_00030891 other downstream 97907 24484289 ~ 24497841 (+) True XLOC_015443
TCONS_00030897 other downstream 153665 24540047 ~ 24540765 (+) False XLOC_015445
TCONS_00030898 other downstream 153827 24540209 ~ 24540725 (+) True XLOC_015445
TCONS_00030908 other downstream 456205 24842587 ~ 24845999 (+) True XLOC_015452
TCONS_00030940 other downstream 1647793 26034175 ~ 26039606 (+) True XLOC_015468

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000004_07686845_07692184.mRNA True 2928 mRNA 0.45 4 CI01000004 7686018 ~ 7693082 (+)