RNA id: TCONS_00030882


Basic Information

Item Value
RNA id TCONS_00030882
length 1469
RNA type mRNA
GC content 0.47
exon number 2
gene id XLOC_015438
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 24304854 ~ 24308682 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGACAGTTGTGCGGCTGGAGAAATGAAAGTGACCCGCACATTCAAAGAGCATGGAAATCAGGAATGAACAGGACTCTCAAGGATTTGGAATCAGTGAGTAAACAGAAGTTATTGGTGACGAGCATGTGAAGGCCGAGCGCTCCCAGATCACTGGAAAGACGGATCAGAGGAGACACAGGCCATGAAAATCTCCTGGAGGTTGAAGGACATAGAGTGCAAGAAGAGGAAAGAGTTTTCACAACTGgattgaatgcaaaaaaaaattgtgactgTAACTATAAGCATATCTGCAACCGATTTCAGTGCCAACTGGAGCAAACGTTTGCACTGATCTACTTTGATGATTACTGTACATGCTTACTCTTTGAGCACATGTAAATCTAttaattgcatatttatttagtattCACTGCAGGGGAATTTGTACTATTACAACCCATATTATCTGTAATTGACCTCAAACAATACAAATGTTTCTAAACTCGATCCTTGTGGTCATTACTGACCTGGCAGCTGGACTTCTGGGCAACACATCATTTCGACGTCATTTCCACTTGCTGCTGTCGGCCTTGCTTTTGTTTGGGCCTCTCCTGAGTCTGTGGGTTTCCCATTATAGTGTCTTCGCCAAGAGGACTCACTTTCTGTACAGGGTTTTCCTGCGCTCAGGCTGGGGCTGGACCTGCATCTTTGTTGGCTCTTTTGTCTTCGTTCTCTCGTTCTCAGTTCGCCGTTCGCTCACTCTTTCCCTGCGACACCTGTCTCGGTTAGCAGTGGCCGGTGGACTGTGGTTGGGCTTCCGCAAGCTGCTGTGCTTGCTGGAAAATGCCACAGGGAGCTGCTACGAGCCCCTCAGTGCCGCTCTTGAAATGACTTCTGGGACCAATGGAGAAGGCCACCCTTTACTGCTCTTACGGGAAGCAGAAACAAAGGAGACATGCGTCCGCTCTGGCATGTTGTGGCGAGGCTACGAAGTATCTGAAGATGCCCTCCTGCTGTGTTTGTGCTGCCTGCTTCTGGCTGAGGAGACGGCAGTGTTTGGGCCCTACCTGAACCTGGGTGGACCCTCAGAAGCCCCGCTGCGCATCCTCTTCCTGTTCTGCGTCCTGCTGTTGAGTCTCTGGGTGTTCCTGCTGCTCTGCTTGCTGGCTTATTTCCCAGAATTTCCTACTCAGCTTTTAGGAGGTGCTTTGGGTTGTTTGAGCTGGAGAGCCCTGTATCAGGGCTGGTATCGACTTGGACCTAGCTGGTACTGTCCTGGAAGACCAGGGGTGGGACTTTTGTCCACCCAGAGCAAACAGGATGAGTTATTAGAAACACAAACTAATGCTAAAGAGATCGACTGAAGTATGTTTGAAATCTTAACTGAACTCAAATGAATGTTGTGTAAGGCTGCAGTACAGCAGAACATTTAGCCAAATCTCTTGTCAATATCCAACGAAGGTATATTTGATCAATTACATATGAAAAAT

Function

GO:

id name namespace
GO:0019915 lipid storage biological_process
GO:0008654 phospholipid biosynthetic process biological_process
GO:0034389 lipid droplet organization biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0030176 integral component of endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050306-28 Predicted to enable diacylglycerol binding activity and triglyceride binding activity. Predicted to be involved in lipid droplet formation and phospholipid biosynthetic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be integral component of endoplasmic reticulum membrane. Orthologous to human FITM1 (fat storage inducing transmembrane protein 1).

Ensembl:

ensembl_id ENSDART00000078972

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030881 lncRNA upstream 43558 24261217 ~ 24261296 (+) True XLOC_015437
TCONS_00033539 lncRNA upstream 280406 24022798 ~ 24024448 (+) True XLOC_015434
TCONS_00033538 lncRNA upstream 364524 23936535 ~ 23940330 (+) True XLOC_015432
TCONS_00033537 lncRNA upstream 525425 23772918 ~ 23779429 (+) True XLOC_015428
TCONS_00030862 lncRNA upstream 684631 23613106 ~ 23620223 (+) True XLOC_015424
TCONS_00033540 lncRNA downstream 175591 24484273 ~ 24488154 (+) False XLOC_015443
TCONS_00030890 lncRNA downstream 175593 24484275 ~ 24488154 (+) False XLOC_015443
TCONS_00030894 lncRNA downstream 199088 24507770 ~ 24509698 (+) False XLOC_015444
TCONS_00033541 lncRNA downstream 294610 24603292 ~ 24612068 (+) True XLOC_015446
TCONS_00033542 lncRNA downstream 407632 24716314 ~ 24720787 (+) True XLOC_015449
TCONS_00030877 mRNA upstream 52348 24188502 ~ 24252506 (+) False XLOC_015436
TCONS_00030876 mRNA upstream 52348 24188502 ~ 24252506 (+) False XLOC_015436
TCONS_00030875 mRNA upstream 52348 24188502 ~ 24252506 (+) False XLOC_015436
TCONS_00030873 mRNA upstream 52518 24177006 ~ 24252336 (+) False XLOC_015436
TCONS_00030874 mRNA upstream 82760 24177190 ~ 24222094 (+) False XLOC_015436
TCONS_00030883 mRNA downstream 8783 24317465 ~ 24320183 (+) False XLOC_015439
TCONS_00030884 mRNA downstream 8805 24317487 ~ 24319965 (+) True XLOC_015439
TCONS_00030886 mRNA downstream 43815 24352497 ~ 24355324 (+) True XLOC_015441
TCONS_00030887 mRNA downstream 65623 24374305 ~ 24386382 (+) False XLOC_015442
TCONS_00030888 mRNA downstream 65987 24374669 ~ 24376609 (+) False XLOC_015442
TCONS_00030870 other upstream 289911 24013250 ~ 24014943 (+) True XLOC_015433
TCONS_00030864 other upstream 624865 23679873 ~ 23679989 (+) True XLOC_015426
TCONS_00030856 other upstream 1030073 23274332 ~ 23274781 (+) True XLOC_015415
TCONS_00030855 other upstream 1046957 23257777 ~ 23257897 (+) True XLOC_015416
TCONS_00030841 other upstream 1313333 22986282 ~ 22991521 (+) True XLOC_015408
TCONS_00030885 other downstream 39907 24348589 ~ 24351040 (+) True XLOC_015440
TCONS_00030891 other downstream 175607 24484289 ~ 24497841 (+) True XLOC_015443
TCONS_00030897 other downstream 231365 24540047 ~ 24540765 (+) False XLOC_015445
TCONS_00030898 other downstream 231527 24540209 ~ 24540725 (+) True XLOC_015445
TCONS_00030908 other downstream 533905 24842587 ~ 24845999 (+) True XLOC_015452

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000004_07642418_07645369.mRNA False 1388 mRNA 0.44 2 CI01000004 7642361 ~ 7645959 (+)