XLOC_015438 (fitm1l)


Basic Information

Item Value
gene id XLOC_015438
gene name fitm1l
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 24304854 ~ 24308682 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030882
GGACAGTTGTGCGGCTGGAGAAATGAAAGTGACCCGCACATTCAAAGAGCATGGAAATCAGGAATGAACAGGACTCTCAAGGATTTGGAATCAGTGAGTAAACAGAAGTTATTGGTGACGAGCATGTGAAGGCCGAGCGCTCCCAGATCACTGGAAAGACGGATCAGAGGAGACACAGGCCATGAAAATCTCCTGGAGGTTGAAGGACATAGAGTGCAAGAAGAGGAAAGAGTTTTCACAACTGgattgaatgcaaaaaaaaattgtgactgTAACTATAAGCATATCTGCAACCGATTTCAGTGCCAACTGGAGCAAACGTTTGCACTGATCTACTTTGATGATTACTGTACATGCTTACTCTTTGAGCACATGTAAATCTAttaattgcatatttatttagtattCACTGCAGGGGAATTTGTACTATTACAACCCATATTATCTGTAATTGACCTCAAACAATACAAATGTTTCTAAACTCGATCCTTGTGGTCATTACTGACCTGGCAGCTGGACTTCTGGGCAACACATCATTTCGACGTCATTTCCACTTGCTGCTGTCGGCCTTGCTTTTGTTTGGGCCTCTCCTGAGTCTGTGGGTTTCCCATTATAGTGTCTTCGCCAAGAGGACTCACTTTCTGTACAGGGTTTTCCTGCGCTCAGGCTGGGGCTGGACCTGCATCTTTGTTGGCTCTTTTGTCTTCGTTCTCTCGTTCTCAGTTCGCCGTTCGCTCACTCTTTCCCTGCGACACCTGTCTCGGTTAGCAGTGGCCGGTGGACTGTGGTTGGGCTTCCGCAAGCTGCTGTGCTTGCTGGAAAATGCCACAGGGAGCTGCTACGAGCCCCTCAGTGCCGCTCTTGAAATGACTTCTGGGACCAATGGAGAAGGCCACCCTTTACTGCTCTTACGGGAAGCAGAAACAAAGGAGACATGCGTCCGCTCTGGCATGTTGTGGCGAGGCTACGAAGTATCTGAAGATGCCCTCCTGCTGTGTTTGTGCTGCCTGCTTCTGGCTGAGGAGACGGCAGTGTTTGGGCCCTACCTGAACCTGGGTGGACCCTCAGAAGCCCCGCTGCGCATCCTCTTCCTGTTCTGCGTCCTGCTGTTGAGTCTCTGGGTGTTCCTGCTGCTCTGCTTGCTGGCTTATTTCCCAGAATTTCCTACTCAGCTTTTAGGAGGTGCTTTGGGTTGTTTGAGCTGGAGAGCCCTGTATCAGGGCTGGTATCGACTTGGACCTAGCTGGTACTGTCCTGGAAGACCAGGGGTGGGACTTTTGTCCACCCAGAGCAAACAGGATGAGTTATTAGAAACACAAACTAATGCTAAAGAGATCGACTGAAGTATGTTTGAAATCTTAACTGAACTCAAATGAATGTTGTGTAAGGCTGCAGTACAGCAGAACATTTAGCCAAATCTCTTGTCAATATCCAACGAAGGTATATTTGATCAATTACATATGAAAAAT

Function

symbol description
fitm1l Predicted to enable diacylglycerol binding activity and triglyceride binding activity. Predicted to be involved in lipid droplet formation and phospholipid biosynthetic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be integral component of endoplasmic reticulum membrane. Orthologous to human FITM1 (fat storage inducing transmembrane protein 1).

GO:

id name namespace
GO:0019915 lipid storage biological_process
GO:0008654 phospholipid biosynthetic process biological_process
GO:0034389 lipid droplet organization biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0030176 integral component of endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050306-28 Predicted to enable diacylglycerol binding activity and triglyceride binding activity. Predicted to be involved in lipid droplet formation and phospholipid biosynthetic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be integral component of endoplasmic reticulum membrane. Orthologous to human FITM1 (fat storage inducing transmembrane protein 1).

Ensembl:

ensembl_id ENSDARG00000056464

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030882 True 1469 mRNA 0.47 2 24304854 24308682

Neighbor

gene id symbol gene type direction distance location
XLOC_015437 BX000358.1 coding upstream 43558 24261217 ~ 24261296 (+)
XLOC_015436 map4l coding upstream 52348 24177006 ~ 24252506 (+)
XLOC_015435 kcnh2a coding upstream 136184 24080694 ~ 24168670 (+)
XLOC_015434 NA coding upstream 280406 24022798 ~ 24024448 (+)
XLOC_015433 CR788285.2 coding upstream 289911 24013250 ~ 24014943 (+)
XLOC_015439 mrpl34 coding downstream 8783 24317465 ~ 24320183 (+)
XLOC_015440 CR384062.1 coding downstream 39907 24348589 ~ 24351040 (+)
XLOC_015441 pimr68 coding downstream 43815 24352497 ~ 24355324 (+)
XLOC_015442 nr2f6a coding downstream 65623 24374305 ~ 24386382 (+)
XLOC_015443 NA coding downstream 175591 24484273 ~ 24497841 (+)
XLOC_015432 NA non-coding upstream 364524 23936535 ~ 23940330 (+)
XLOC_015428 NA non-coding upstream 525425 23772918 ~ 23779429 (+)
XLOC_015446 NA non-coding downstream 294610 24603292 ~ 24612068 (+)
XLOC_015449 NA non-coding downstream 407632 24716314 ~ 24720787 (+)
XLOC_015455 NA non-coding downstream 594984 24903666 ~ 24906615 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location