RNA id: TCONS_00030873


Basic Information

Item Value
RNA id TCONS_00030873
length 6369
RNA type mRNA
GC content 0.43
exon number 16
gene id XLOC_015436
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 24177006 ~ 24252506 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TATAACCAGGGGTCTGTGGCATTTAAAAGATGAAAACCTCTGTCCAGGAGCAGCAGTGCTGCTGTGACAAGAAAAAGAGAACGAGCGCAGTTGTCCTGCATTTTGATTGGCCGAGCTGTACGCGGGGCGGGGAGTCGCCCCGCTCTGACAGAGGCGAACTGTACGAGAGGGCGGATCTGACAGTGTGCACATCGGCCAACACTACAGCGCACtcaattttaaaaacaacaacaacggGAAGATGGACTTTAGTTTACGTGATGCCTTCACAGATGGGGCACCTAAGGCAGCCCAGGACGGCTTGATGAAGAGGGATTTTGTGGCTGGGTTGGAAGCACAGAGCTTTGATGATAAAGTGGGCGAGACTGTTGGGAAGACAGACTATCGCCCCCTTCTGGATGGGATGGATGGGAAAAGAGAAGGGTCTGGGTTCATGTCTGCAAGCCCTGGAGGTCTACGTCATGACCCTCAGGGCGAGATTCGTCCTAGCCCGCCTGGGCAGTACGTCTATAAGAATGACTTTCAGTCAGgCCCAGCTTCAATGATTGGAATGCCAGTCCAATTGGGAAATCAGCAGAAGGATAACAGCATGGACTCTTTTCTGGGGTTCTCTCAGCCTGGAATGAACATTGGTATGAATATGAATGTGGGCATGGCCCCTTTCCAGAGTTCCAAACCCCCCAGCATGGGTGAACCTCAGAAGACCTCACCCTTGTTTGCCAATGAACCACTCAAACCATCGCAGATAACCGCTAATCCGAGTGAAACGAGTCCTCGTATCAGCCAGGAAAACTCTGCAGtGAAAGAAGATAAGACAGCCAAGGACAAAATGGAGAAGGTGGAACCTGCTCCAAAGGTGGACAACTTCCACACTATTGAAAAGCAAGACAAGCCTGAGAAGATGGAGAAGATCGATCACTTCGACAAGAAAGAAGACATCTCTAAGAAAACAGACAGCATGGAGAAGACTCAGAAGAGTGAGCAGATCATCAAAGATGAGAAGAAGGTTGAGAAGGAGGAGAAGCAAGATACTAAAGCTGAGAAAAATGAGAAAGCAGACAAACCTGAGAAGACAAACAAGGAGAAAGAGGAGAAGAAAAACGATGGAGAGAAAGTAAACAAGACAGTCAAAACTGAAAAGAATGTGACGGCTGCAAAAACACCTGCGAAGTCTCCAACAGCTAACGGAAGCAAGGAGGTGACCAGTCCGGATAGTAAGACTAAGCCTTCAGCTGCATCAACCAAACAAAGCTCAGCGAGACCAAACTCGCTGTCCACTGGCGACAGTGCAGGTGCCACCAAACGCACCTCTCCCACCACCAACTCTGCCAATAAAAAAAGCCCTATTCCCAAGGCAACTACCCCCACTGCTGGCAGCAAGAAAACCCCCTCGTCTACTGTTGAGAATAAGGCAAAGTCGTCTGAGACTGTTACAGCAAGCCAGCGTCGCCCTCCAGTGCCAAAGGCTAAAGCTGCTTCTGCTTCCAACTCTAAAAATGGCACTAGCGCCCCAACAACCACCTCTGCCCGACGCTCCTCTGCTACAAAGAATGAAAACCAAGCAGGCGATGCAAAAAAGACAACTACAAAGACAACACCAGTTAAAGCAACCCCAAGGACAACCCGCACACCACCCTCTGCCACCAGCACAGCAGACACCAACGGGACCCCTCGCCCATCCCGCATCACCAAACCCCCTGTGCCCAAGCAGACTCCTCTAGAGAGGAAGCCTCCTGTGCCTCGAGCCCCCCGAAACATCCGGGCCACCAACGCACCACTACCCGATCTGAAAAATGTGCGCTCCAAGATCGGTTCCACTGATAACATGAAGTACCAGCCTGGAGGAGGCAAGGTCTCTGCAGCCCAGGGCAAGACCGATGCTCTGCCAAAGACCAGCCAGGGCAAAGTTCAGATCGTCCACAAAAAGCTGGACTTCAGCCATATCACCTCCCGATGTGGCTCCAAGGACAATATCAAGCATGTTCCAGGTGGAGGAAATGTTCAGATTTTAAATAAGAAGGTTGACTTGAGCAAAGTGACCTCAAAATGTGGATCCAAGGACAACATAAAGCACAAGCCAGGTGGTGGTGATGTGAAGATTGAATCCCATAAGGTTAACGCCAAGGCCAAGACCAAAATGGGATCAATGGACAATGTAGGACATGAACCAGGAGACAACAATTCAAAGGCTGAGGAGAATCAGCAGAAATCTGAAGGAAGTCCGTCTCCCCCTGCCAACTCTCTGCCTGTGCCGGCAGGTAATGGGGCAAAGGAGAATGGGCTGAAAGGTAGCACTCCTACTCCCGTACCTTCTTTTGGTGAAGGGCCCCGGGACTCCCAGGGCCTTGACAAGCGCATCCCCGGGACAAATTGAGTCCCACAAGCTGAACTTCCGCGAGAATGCACGAGCTCGCACGGACCACGGCGCTAAAATCATCTCCTGGTCCCCCCTGAGTGACAGCCACCCCCACCCACATCGCAGCACCTCTCTCAGTGTTTCTCTGGGGTCCGCCATGTCCTCACACTCCACCCAGCTTGTCCCATTCACTCGGCCATGAGATGGGTGCAAACCAGTGCACTAGCAGGAgaaggactcttattttaacacaGCCTGTCCCTTTAAAACCCATTAGCATCTCttcttgtttacatttttgttttatttcctttTCTGGGAGATGATGTTTTGAAAAAGCATAGTTTCAGCGCACATGTTCGACGCAGAGTTGTGGTATGAGTCTAGATTTGAGATGAATTCTCCAGATGGTTGTCCAGCCACATAGCCATCTATCCTAAAACTACAATATTTAGTCCAACAACACAAGAGTTAATTTCTAGACTCCCTACAATCCCAAAAATAGACCTACATTTTAGAGGCTACACCCATCGGTTTGGCAGTAGACATTCTCCAATGGGAACCCCAGAACTCACTTGAGATGTAGCTTATTACATCATATTATGGCAGTAATGCTCCCTGTATTGTTAGTATGTGGGGCTGTCTTAAATCCCAGTCAAAAAGGGACGAACCAGCCACCATCTATTCATCTGCTCCCTTTGCTCCACTGGTCCTGTCCACATCACATGAATTATAAACCCTGTCCTTTCCCCCAGTATTTAAATGAGCACTTAATTATTTGAAACCTATAGGCTGTTCAAGCAAAAACATATTTACATCTTCAATGAGTTTGCTGTTTCGTGTTTGCGTGAATTACTGTAACAATGAGCTGTATCATTATGATGTCTAACCATCTGATTACATCATCCACTTTCCAGCATCTTGTGAACTAATAGGACACAAAAACACATTACATACATTATACAGCATGATACAAGAGGAGGAAAAGGCAGTGGCACGCAAACTAAACAGACAGGATGGACAGGAATGAAGAAAGATGTCCGAAAGTTAGAATGGAAATGCGTTCACACTCCGTACACAGGTCATGTTTATTTGCTCAAAGGTTCGAACATCCCTCATTTTGAATTGAGTATTGTATGTCAAGTgtcaatggacccttttcacatttctgggtttctcagtagcggaaagCAGcatggttgggtaaacttagagtgcagtgaatggaaaagtacaacaaataattttttacaatcctatttgctgaagtAATAAacgaaaaactccacaatggtgttatcaagactttcagaaaaaggaaataaatagtgtgagactaataaccacagaCAGAGGAGaacataatgtcaaatttactctcagcccctgTCACGATCGGGTAAGAATCAAGTCAAAAAGGAACCAAATGCAAGTGAgagtttattaatataatatagagTGCAACGAGTAAGTCAACAGAGTGTGATAGCAGCATGGATGAAAGTCTTAGACACAGGAATCACAACAGGAACATCTTTCTGGCATCCTTTCTAAAAAGCCGTTTGGAAACTCCAAGTGGACACATGGTACCCGAATTATcaaattaggcatgggacgattacCTTTTTCAAGTTATAcagcggtttgaaaaagtcaaggttttaaaaccaccaaaatgttctgctttactgttcctaatgtatgtataagatttttttatttatatatatttgtttaagttttttaGGACATCAGTATCTCCAggagaaaatatatccaaagttGCCGTTTTAAATTGCATAAAATCTGTGTTTACTACtaacgaagacagcagaagtcaataattcatttgaattatttagcctgacatgtttactgttttataaatgcttctaaaaataaattaaattgtgttcaaagagggaaaaaagtatgttttttacccagacatttaaaaatacatattttagagcagtaatcacaataccatcaaaccatatttttatccaaggttatcatacagtcaaAATCTCATACTGGCCCATGCCTTGACTAAAATAGTCAAAATTACATGACACATAAACGCATAtctattcaaaatattaaaaaactttcaaggatttaatattttgatgatagttaaacgcgtcataacagacttgtgaaaagggtccattaatgGAAGGCTTTTGCACTAAACATGAACCAACATGTGCAAAGGCTCATCACATGAACAGTAAATATATCCAAAATAAGTATTGCAATACAATCCGTATCCCTGTATTTATTTCGTGGCAATTATTAAGCTGTTCTATAGAAGTTACTGTTTTTAATCAAACATAGTAGGATATGCTATTTGGTTTCATTACGAAGTGATGTATTATTCACAAGGTTGTTGAATAtcatagttttaatctctctgaACCTACTATTGTTGGGCTGCTTTTTGAAACTGTTAACTAGTGACACTGTTTATCAGTGAATTTGTGGGCACTTTATTGGTAGTAGATATACCTTTAGCTGCACAATGCctgcaggaaaaaaaagtaaacagtTTGCTGTTGTTGGTTAAAAGCTTATGTTTGTATACAGGGTTTGATTCACTTCTTGTTGTGAAATATTGACTTTTTCCTGGTAAATTACTGTGACGTCATGGTAGATTATTGATGGTGGTAATGTCGTGGCATCAAAAATCCCATATCAAACTGAACAAACCAGGAGGTATTAAATTATGCAAGTATCCTATGAAATAATTAGCTCATGAGCATTCAGAATGCACTTTATGATGGATGTTTTATACTACAAATCGAGTTATATATGACTGGTTGAGCGCCTTTCCCAAAATTCTGTCCCCTGACAAAGAGCCCCAGTTACACAGAAATGCAAAACTTGTATCTCATAGAGCAGTCTGTAAATACAGTACGAGTGTGAGCAGTGTGTTTCATGTAGAGCAGCTGTGCTTGGCTAAACGGTCCTGTCTGTAGTTCCTTTTGTGATTAGCGTGTGCTGTTCAGGGGCTGTGCTAGTAAACCTCAGTGTTGTACTCTTGATACAGTGATCATAACCTTTCATGCCTTCAGAcagctttttttgtcatttccatAATAAATGAAAACTCACAGTGTTAGTACATTCACACGTTCCCCCGCATCGGTccatttaaagcagttttgtaAATACACGTTTCACACTTTATACCCTGccggggaagaaaaaaaaaaaacacttcttgaTTGGGTTGTATAGAGAAGCAAAGTGAAGATTTTTGCGTCTATGAATATTTCTCCAGACAGTATTTTATTCTTAAGTGAGTCTGCCTTTTTTTGAAGTAAAAAAAGGGCTGGCAAAcaagaatgtttttaaaatgtaatgtattcaGGAAGCGAAGAATATATATTATGTGTCTAACTTTTTCTCTTTGTCATCACAGGTCACTTACTAAATACATTGTAATCAATAACAGGAGGAGTGTGATTGATTTTTGACTGTGGACGAAAAAAAAGAGGACTCTTGAGGATGTCCTTTTGTCTGCATAAGGCACAGCATTCTGGTAATGACTTGAGTAGCCTGAGACAGGACGCAGAAAGTGGGTTGAGAGGTTATAAGTAGTCAAGCAACAACCACAGGAACAGCGATTCCTCCCACAAACTGCACCTGACACATAGACCTTGAATGTTGTTGTTTGGATATCCATGCCGCACGTCTGTATGAGACTAACTGTAACTGGTAGGCTAATTGGCATGTTTAAAAGTAGATAGAGCACTCCGATTAGGCAGCAAAAGAGCCCCCTAGTGTGTCTGGTAGGACTCACAGTGTGTCTACTTCCTATAGACCACGACAAAAGCGCATGCTGACAACAATGGACGACTGACGCCGGTCCTAAATTGGAATTAATGTCTCCCCTCTTATTTAAGATGTATTTTTTGGTATGAAAGAGATCATTGTGATTAATTGTTAACTAGTGATGTGGATATttaatcatgaataaataaataaataaaaaacaagctaaa

Function

GO:

id name namespace
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0031175 neuron projection development biological_process
GO:0043005 neuron projection cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0015631 tubulin binding molecular_function
GO:0008017 microtubule binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-581 Predicted to enable microtubule binding activity. Predicted to be involved in microtubule cytoskeleton organization and neuron projection development. Predicted to be located in cytoplasm and microtubule. Predicted to be active in neuron projection. Is expressed in brain and liver. Orthologous to human MAP4 (microtubule associated protein 4).

Ensembl:

ensembl_id ENSDART00000132582

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033539 lncRNA upstream 152558 24022798 ~ 24024448 (+) True XLOC_015434
TCONS_00033538 lncRNA upstream 236676 23936535 ~ 23940330 (+) True XLOC_015432
TCONS_00033537 lncRNA upstream 397577 23772918 ~ 23779429 (+) True XLOC_015428
TCONS_00030862 lncRNA upstream 556783 23613106 ~ 23620223 (+) True XLOC_015424
TCONS_00033536 lncRNA upstream 567730 23576001 ~ 23609276 (+) True XLOC_015422
TCONS_00030881 lncRNA downstream 8881 24261217 ~ 24261296 (+) True XLOC_015437
TCONS_00033540 lncRNA downstream 231937 24484273 ~ 24488154 (+) False XLOC_015443
TCONS_00030890 lncRNA downstream 231939 24484275 ~ 24488154 (+) False XLOC_015443
TCONS_00030894 lncRNA downstream 255434 24507770 ~ 24509698 (+) False XLOC_015444
TCONS_00033541 lncRNA downstream 350956 24603292 ~ 24612068 (+) True XLOC_015446
TCONS_00030871 mRNA upstream 8336 24080694 ~ 24168670 (+) False XLOC_015435
TCONS_00030872 mRNA upstream 11410 24081050 ~ 24165596 (+) True XLOC_015435
TCONS_00030869 mRNA upstream 339583 23823622 ~ 23837423 (+) True XLOC_015431
TCONS_00030868 mRNA upstream 356726 23808640 ~ 23820280 (+) True XLOC_015430
TCONS_00030867 mRNA upstream 371867 23790748 ~ 23805139 (+) True XLOC_015429
TCONS_00030882 mRNA downstream 52518 24304854 ~ 24308682 (+) True XLOC_015438
TCONS_00030883 mRNA downstream 65129 24317465 ~ 24320183 (+) False XLOC_015439
TCONS_00030884 mRNA downstream 65151 24317487 ~ 24319965 (+) True XLOC_015439
TCONS_00030886 mRNA downstream 100161 24352497 ~ 24355324 (+) True XLOC_015441
TCONS_00030887 mRNA downstream 121969 24374305 ~ 24386382 (+) False XLOC_015442
TCONS_00030870 other upstream 162063 24013250 ~ 24014943 (+) True XLOC_015433
TCONS_00030864 other upstream 497017 23679873 ~ 23679989 (+) True XLOC_015426
TCONS_00030856 other upstream 902225 23274332 ~ 23274781 (+) True XLOC_015415
TCONS_00030855 other upstream 919109 23257777 ~ 23257897 (+) True XLOC_015416
TCONS_00030841 other upstream 1185485 22986282 ~ 22991521 (+) True XLOC_015408
TCONS_00030885 other downstream 96253 24348589 ~ 24351040 (+) True XLOC_015440
TCONS_00030891 other downstream 231953 24484289 ~ 24497841 (+) True XLOC_015443
TCONS_00030897 other downstream 287711 24540047 ~ 24540765 (+) False XLOC_015445
TCONS_00030898 other downstream 287873 24540209 ~ 24540725 (+) True XLOC_015445
TCONS_00030908 other downstream 590251 24842587 ~ 24845999 (+) True XLOC_015452

Expression Profile

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