RNA id: TCONS_00033536


Basic Information

Item Value
RNA id TCONS_00033536
length 1401
lncRNA type read_through
GC content 0.39
exon number 2
gene id XLOC_015422
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 23541727 ~ 23609276 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTGGCATGACTGTGGCTCAGTGTCCCGAAGAACACGTGCACACAAGTTAGCTAGCAAAGGCACTGCAGCTTGAAGGACATCATCCTCACTGCAGTCGGGAGAATAGAGGACAACACTGTGGTCGTCAACATGGACTGGACAGCCACTGGTGCTTGGTTCCTCCGATGACAGTGTCCTGAAGAACACGTGCACACAAGTCAGCTAGCAAAGGCACTGCAGCTTGAAGGACATCATCCTCACTACAGTCGGACATGGCACAGGCTGTAGGGACGTCGTCAACACTTTGAGCTGCAGCATGGTCTGGAGTTTGGAGGGTCGGTGCAGTGATGGGAGAATGGAGGACATCACTGTGGTCGTCAACATGGACTGGACAACCACTGGTGCTTAGTTCCTCCGATGACAGGTGTTCAGTCCTATCATCAATTTCTCGACCTAAAAgagaaataatatgtaataactaaggattgttttgttcacattttaTAAATCAAATATCATTTAGCCATATTATTGAATGATAACAATTATGAAGTGACTATGTGAGGTGTAGTTTTGTGGATTCAACATGCATGGATGTGTTTGTCATGCTTCTTGTGTTTTGACAGCTCCtattagtaaataattaagtTGCCATGTCATTTCATCATAAATAAAACATCACCTTAAATTCAGCTTAAAGGAATGAATTTCagttttgtgtaaatgcatgaCAGTATGAACTTGTATGCTACTGTATGTAGTAAACTGTAGGATGttgagttcatttatttatttaacttgaaGTGCTGGGTAGGAAATATGGAGAATAGCTGAAGAAATATACTAAATCAACTGTATGTTACAGACTTCATAAAACtgattaataaaactaaataaatatagtttaaaacattattaataaaaaacttCAACGACATTGAGTTTAGGGCCCTATATGCAGACTTTGGTGTTCTTACAACATCTCTACATAATTTACCATCTCTGGTCATCGTGGGTGGAGAGTTCTTCTCCACGGGTTCTTCTCGATCTGAGTGGGGTTTGTTTTCTGTCCTTCCCCGCAGGACTAACGCAATTACTCCGagtaatgtaaacattttaaagagtAAATAGTTACCAATTTGAAAAGCACAAATCTACGAACAATTAACTGTCAGTAAAGACGAAGAAAGTCTTCGTATGTGTTCACACTACAGTGAATTGTGTGTAATGGCGCCTGTTCAGCAGAACGTCATCTTTAGAACGTGTTTTAGAACATCAAATGACATTCTAAATTCCAATAACACCCAGCCGAAACGTGATTGACCCgtttaaaaattcattaaaaatttaatacaaaataaaagacaatAATTTTAGTGGATCTTTCAGGAGTCACTTCAAGTCTTTGTTTTTGTATTCAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033535 lncRNA upstream 18486 23550186 ~ 23557515 (+) True XLOC_015423
TCONS_00033262 lncRNA upstream 30910 23541727 ~ 23545091 (+) False XLOC_015422
TCONS_00033531 lncRNA upstream 96755 23440077 ~ 23479246 (+) True XLOC_015418
TCONS_00033532 lncRNA upstream 124600 23450772 ~ 23451401 (+) True XLOC_015420
TCONS_00033530 lncRNA upstream 154954 23414883 ~ 23421047 (+) True XLOC_015419
TCONS_00030862 lncRNA downstream 3830 23613106 ~ 23620223 (+) True XLOC_015424
TCONS_00033537 lncRNA downstream 163642 23772918 ~ 23779429 (+) True XLOC_015428
TCONS_00033538 lncRNA downstream 327259 23936535 ~ 23940330 (+) True XLOC_015432
TCONS_00033539 lncRNA downstream 413522 24022798 ~ 24024448 (+) True XLOC_015434
TCONS_00030881 lncRNA downstream 651941 24261217 ~ 24261296 (+) True XLOC_015437
TCONS_00030860 mRNA upstream 91653 23482798 ~ 23484348 (+) True XLOC_015421
TCONS_00030857 mRNA upstream 214068 23351454 ~ 23361933 (+) False XLOC_015417
TCONS_00030859 mRNA upstream 214992 23352302 ~ 23361009 (+) True XLOC_015417
TCONS_00030858 mRNA upstream 220296 23351533 ~ 23355705 (+) False XLOC_015417
TCONS_00030854 mRNA upstream 282500 23222939 ~ 23293501 (+) False XLOC_015415
TCONS_00030861 mRNA downstream 3764 23613040 ~ 23620219 (+) False XLOC_015424
TCONS_00030863 mRNA downstream 67903 23677179 ~ 23713760 (+) False XLOC_015425
TCONS_00030865 mRNA downstream 92337 23701613 ~ 23726605 (+) True XLOC_015425
TCONS_00030866 mRNA downstream 121918 23731194 ~ 23745290 (+) True XLOC_015427
TCONS_00030867 mRNA downstream 181472 23790748 ~ 23805139 (+) True XLOC_015429
TCONS_00030856 other upstream 301220 23274332 ~ 23274781 (+) True XLOC_015415
TCONS_00030855 other upstream 318104 23257777 ~ 23257897 (+) True XLOC_015416
TCONS_00030841 other upstream 584480 22986282 ~ 22991521 (+) True XLOC_015408
TCONS_00030832 other upstream 909301 22660071 ~ 22666700 (+) True XLOC_015401
TCONS_00030805 other upstream 2200407 21375467 ~ 21375594 (+) True XLOC_015384
TCONS_00030864 other downstream 70597 23679873 ~ 23679989 (+) True XLOC_015426
TCONS_00030870 other downstream 403974 24013250 ~ 24014943 (+) True XLOC_015433
TCONS_00030885 other downstream 739313 24348589 ~ 24351040 (+) True XLOC_015440
TCONS_00030891 other downstream 875013 24484289 ~ 24497841 (+) True XLOC_015443
TCONS_00030897 other downstream 930771 24540047 ~ 24540765 (+) False XLOC_015445

Expression Profile

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