RNA id: TCONS_00030865


Basic Information

Item Value
RNA id TCONS_00030865
length 7037
RNA type mRNA
GC content 0.38
exon number 18
gene id XLOC_015425
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 23677179 ~ 23726605 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACACGAGGAAGAACGTTTTCCGCCCAAGGCGGGGTCACCATCCCTGTTGGCAAAGTTTGGCTGTTGGGACTGAGAGCGGTCGGTGAGATCAGCACAAGTAAATCGAGTATAAATACAGATCGGTCGTTTTCCAGCGCTCGCCGCCGTGTAAGCGTGCAGTGGGGCGTCCGGCTGTCGTGATCTGACCGCAGTCATGTCCGAGGACCCGAGCTCTCAACCTTGGTCCATCGACAAGGATGACTATGAGCTACAGGAGGTGATCGGGAGTGGAGCCACAGCTGTGGTCCAGGCAGCGTATTGCAAACCCAGGAAGGAGAAGGTGGCCATTAAACGCATCAATCTTGAGAAATGCCAGACCAGCATGGATGAGCTCCTGaaagaGATCCAGGCAATGAGCCAGTGCCATCACCCAAATATTGTGTCTTATTACACGTCCTTTGTGGTCAAGGATGAGCTTTGGCTGGTCATGAAGTTGCTCAGTGGCGGCTCAGTGCTTGATTTTATTAAGTACATCATTTCCAAAGGAGAGCATAAATCGGGCGTGATGGACGAGCCCAGCATTGCCACCATACTAAGAGAGGTGCTCGAAGGTCTCGAATATCTGCACAAAAATGGCCAGATTCACAGGGATGTGAAGGCTGGAAATATTCTTTTAGGAGAGGACGGCTCTGTTCAGATTGCAGACTTTGGTGTTAGTGCCTTTTTAGCGACTGGTGGAGACATGACTCGAAACAAAGTGAGGAAGACATTTGTAGGAACTCCATGCTGGATGGCTCCTGAGGTCATGGAGCAGgtTAGGGGTTATGATTTCAAAGCTGATTTATGGAGCTTTGGGATTACGGCGATTGAGCTGGCAACCGGAGCTGCTCCATATCACAAATATCCTCCGATGAAGGTTCTCATGTTAACCCTGCAGAATGACCCTCCGTGTTTAGAGACTGGAGTTACAGACAAAGAGATGGTTAAAAAGTATGGTAAATCTTTCCGGAAGATGATCTCTTTGTGCCTCCAGAAGGATCCAGAAAAACGGCCTACAGCTgctgaactcttgaaacacaagTTCTTCACAAAAGCCAAGAACACTGATTACTTGAAAGAAAAACTGCTGGAGAGGGCACCTACAATAGGAGAGAGATCAAGGAAGgTGCGGAGGGTCCCGGGCTCCAGCGGTCGGCTCCACAAGACTGAGGACGGAGAGTGGGAATGGAGTGATGATGAGCTGGATGTGGAGAGTGAGGAAGGAAAGGCAGCAGTGGCTGCTTTACGGTCACCAAGAGTAAAGGAGGAGGCGGTGCCGAATGCGGAGGTTTTTCCAGCTGAATCGTCTGGTTTCCTGCAGCCAGCAGCTGTAGGTCAGCCTGAAGTGCCACACGCTGCAGATGACACGGCCACGATATCAGCCTCTCAGGCTGTTGCTGGACCAACTACGACGGGGCAGGACTCAGCTAAAATCCCTATTAGCCTGGTCCTTAGATTGAGgaATACAAAGAAAGAGCTGAACGATATCAGATTTGAGTTCATGCCAGGGAGAGACACAGCAGATGGAGTGTCTCAGGAGCTTGTGTCTGCTGGACTGGTGGATGGGAGAGATCTAGTCATTGTTGCAGCCAACTTACAGAAAATTGTTGATGATCCACAAACTCACAAAAATGTCACTTTCAAGCTGGCATCAGGAGTGGACAGCTCTGAAATTCCAGACGATGTTAAACTCATGGGATTTGCTCAGCTGAGTATAAGTTAAAACCTAGTATTACCAGCAAacgtaaagaaaagaaaaaaacccaGACTTGTTTGCACACCAGTGCATTGTAAATGCTTTCATTGGCCTAAAGAAACCACTACTGCCAAAGAGACAGAAGGAACCTGACACCACATAGGATTAACAAATGTTGAATAGGACTGCATTCGAGTTCTTCATAGGAGCGCACCTCAGATGTTTACAGTATTCATGTATGTTTCGTTTTCTGTTGCTTTAAACATTTGCACAATCTGAACCAACTCTTAATACTGGTAGATGTCAAAAGAATGCCTTACTTTCGATAGAACTACTACTGAATTTACAACTGTAGGTAGATGGTAGCtgtgaaaatgaatgagtgaccgactgtgtgtgttttcagctgtGTTACCTCAGTGGAGGCTGGAGGGCAGGATTGCCATTCAATAGCGTTTAAGGGTGCATGTCGTCGGCAGCCTATAAAGTCAGCTGTTCACTGCACTGTTCTGCAATGTGCGCTGTCATCAACACCGTATGGTTTTCCACATTAAACACAGGAGCCATGTCACACGCACCTCACAGTTACACATTTGGGCTGCTCTCTCACTATCGGGATTACATTCCCATCATTTTGCATGGGCTAATGCCAGACTGCATGAATGATGTTTTGACGTAAGAAATGCTGATCATTTTGCTCTCGGTTCATTTTGTCGATTGGACTGTTCGTGAAAACAGAAGGTGGGAGAAGAAacgattttatttaatttatccaaTACATCTTTCTTCTTAAAGATATATATGCTGTTCTTTAGGAAAACGACTGAAATTCTCTGGAAATCGTGCGTTTTAATTCAATATGTTGGAAAACAGATGGTTATATGCAACTTTGGACTGAGCATTCGTTTTATTTACATGCATTCTATTATGTGTAGCGGCAGCTGTTTGGATAGTTCAAGAAATAGATTTACCATTTATTTGAAGGATTTACCAGTGCTTGCGAGGTAGCAAAAGGTTAGCTTTACCACTGGTCAAATAAATTGATCTTGGTTAAGTAGTTTCAATATGAAATATTTCAGTCTTCAGACCAGCATGAGAATGGTTTGTTAACCAGAAGCATTACATTTTACAATTATTAAGTGGTCAtagaggatttatttattttttgcattattttgaatGTTATCTAGCAAACCCGTTACAGATCTTGGTATGCGAGGGATTGCATATTCTCAGATTTGGCAGTTAAATTTCTCAGTATTCATTTTCTCTATATTCTGCTATAGAGTGCATTAGTTCCTGTTGAATTTTAGCTGTTTTACCACTTTAATTTCAAATCTATTAAAACCCatagtttttttaaatggtcTTAACGTGTCATAAGTTATGAACCAAACAAACCAGTTATTAGGACGAATCACAGCAATATTACAAACTTTGAATTATTTGAAGAGCATTTGAAAGTCTGACAAAGTTACAAGACTACTTAACAGcattaataagaaaaaaacaaaacaaaaatattgttatatgaAGCACAAATAGCACAAATTAAATTTGGCAGGTAAATATAAATCCATCCATATAAAGTTGTTGGTTGTATCTGTAGAAACAACCtttatattttattgcaaaatGTGCATATACATATTTTTGGAGTGTAAGGAGATTGCTTTTTggaagtgggcggagctaaagcCATCTTTTGACTTgctctgattggtggaatgttGTGCACATAAGTATGGGTAATATAGTTTGTTTAGAAATAAGTTGGTTTGAGGTAtaccaatggtctcaaactcaattcctagagggcctcAGCTCTGCTTAGTTTATATAGCTTAATATTCTacatagtagtcttgaacactttGATTAGGATCAAAAGTGTTTGCTGTTTATCCTTTTTAGAAAATGGAAGAAACTGGGCTTGTAGCTGGTTAAAATGGGTCTATAAAATCACTGGCTGCCCTAAACCAGACATTGGCCAGTCAAAAATGACCATTAACAGATCAgactgcactttaaaaaaatgctgggttctacacaatttcttcatgttgtcttagcacaaatcgattaagttagtttcattgtttttataaattttagtAGATTagacttaaaacaattaagtattCCCAGTAGAACGCTATAATTGTGGTGATTCAGCTCAGTTTAAACAAGTGATTTGAGCAAGTagcaaaaaaatcattttttgagtgtagggtTGTAGCAAATTTTTCAGAGTTGCAGCCCTTAaagaatcgagtttgagacctgtgaTGTATACAATCGATTAACAACATCGGTCTGTCTTCAAACatttagcactttttttttatataaacaaatctTTTTAGGGTTAGTTAATTATTCTGTAATCCAACTATTGCACTCTATTaagtgtaatattttaaattatggcTCTAAATTGGTCCTAAATGAATGTCTTCATATGACCCATTTTTGAAAATGAGACGCATCTAAACTTAATTTTCTGAGATATTCCATCTTGATTTGATTTAGCGACATTTGAGCCTAAAAAATAGAGCATCTGATTATTTCGgttgtgtttaagtgtgtgtctAAATTTTTCTAACTTCTTCCCCATGTTTTAGCTCATTTACAGTCACAAACTGGTATAGTAGTAATATTgacctcttttttttatttttattttttaggcaCAGCCTAATTTATACATTTCTCAATCTGGAAATTTCAATGAAACCAAAACACTCTACACCTGTAATTACATGCATTCGAAGAGCTAAACTGCTGAAATGTGTAGATTTATATGATACAATACAGTTTGCTGACCTTGCAAGTGCTGATAATGAGGTGAAGACCAGTGAAATGACTCACTGACCAGCAAGAAATACAGGAAAAGTGATTTAAGGACCTATTCGGTGTCCAATGATCTTGGTAATAGGATCCTTTGAAATTGAAGTTCtgtttttgtaatatatgaagTCCATCACACATTCGTCTTGCTTAATATCATTTGTCTCAGCTGTAGACTTATGTCAGATTCCATGTATATATCAGAAGAAAATGTGTTCACATGCAACTGGTATTTTATTCCATCAAAATTAAATAGCGTGATTATATTGCCAGTTGTCTTGGCaggaactgattttttttttttaaccgtttTGCTGGACTTTTACTATATTGTCGTCTTTATCATACAAAGCATACACTCCATCTcacttaattttaaacattttttacagttatttttatcTCCTCGGCTTCCAACCAACTGTTAatttgaaattgtttttaaaaccgATAAATTGTAGACACAGTGATTCACGCGCTGTCACTTGTGTGTATGTGCAAATGactgttggattactttattttagATATACTTTGTGTAAATTCAACAATGAATGTGGGTCGGGCATCAACAAATACTTCAACGAGTAAACATGAGTAAAAAAAGTTCTGTAAATAATCGAGTTGGTGTCGTTTATATAGAATATAAACAGTATACATACGGTTCACAGTTGGCCTTTCTATGGAGTGGACGTGGTGGTTTTGTCTTACGtctttttgtttgttggtttctctgttcagtcaaaaaaaaaaaaaaaaagtcaaacgcAACACTTGCCGCAAAGGGTGTCATTACTAAAAATGTATcccataaaatattacattagcATGACTTGAAAGTAGTTTTTTATGTACTTATTTCTTGGTCAACAGTGGAGGGCtattattttcaaacatttcagtTTCTGCCTTGCTGTCTTCGTTTTCTTGACATTGTTGAAGTGGTTGgttgttttatgtgtttttttatgctTAAATGGGCTCATATCAGTGGCATGCCACCTTGCTATTGTTACTATGATTTTTCCCCCTTAAGATACCTTAAGTGGACTATAAAGGCAAAGCCTAAACACAAGAATTAGATTTCTTTAACCATCAAAAAGACCCCAGATTCTCAAAAAACGTCTTCAAATATGTCTTGTAAAACACTTGTCATTCTCCTTCTCACCTTGGTGATATGAAAGTATTTTTTTCACTTCTGTGTAAGTGGTTGACCCTCTACTGGAAATCATTGGAAGTACTTCAACAGAAAATCTTCATAAAGAATATTCTTCATTCCTTATTTGTGTGAGACCTTCAGATTGATGCATCACAACTTGTTACATGTTTATCTCTGGTGATGTTTCTGTGTTGCATGGAAGCTTGATTCAgtattggaataaaaaaaaacattgagtcaGTTCTGAAAATAAAATTCTGGGTTTCTGGGAAACACTATTGATGTGCAAATTTGAGACTTTTCCGAAAGcagtttagtttattattatattttcatcgTCATTATTTAGTTAACTTATTTTTATGATCCTGCACTTTTTCCCCCTGAGATTAGAGGGGAATTCTAAGGATAAAACCAGAACTACAATAAAGTCCCAACCTATGggaaataaaatagaaactaaATTGCAGATGCAAGTTAAAAATTCAAAAATTTTTCCCATAGAAATCTCGCTATTaggattatttttttgtaatttgaagttTTTCCTCAGAATTCTTTGTCCATTTCTCgcaattttgtctttttttacccCCTCAGACTTATGAGTTTGCTTTGCAATTTTGACTTTTATGTCAGAATTGcaagtttttttgttaaactgttCTTAAATTCAGAGTATTAATAAGTTGAGACAATTGCTAGCCTGTAAACTTGCAATTTCAAGATGTAACATTCCAGTTCTGAGGAAGTTCAAATTCCAAAACGTAAACTGCGAGATGTAAATGCAGTATTTTAAGGAAAATAAAGAACAGAAAGGTTTAAGTTCCTTTTCCTCAGAATTCTGCATTTATATCTTGCACTTCTGACTTCTTGAGCTCAGAATTAAGGAGAATTGAGAACTCAATCTAATTGAGAGATACTTTTTTTTATTCCCAGGTGGAACAAGCGTCCATAGTGTTGAAGTGAGTTGTATAAGATCATTCCACCCTTCTGTTCTGTCTGcagactgaaggactgctgtattTTCACACAAGCACATGTATGCAGATCTTTCATAGAGCGATTGTCTCCATTCTTGTGGAATATCTTTGGGTTTTCAattcaaagtttttttgttttttttatgcgtgtctttttattttaatgaactgCAAGGATTGAACAGCAACGAAGGTATTACTGTCGCACTCAGTATGGGATTTGTGAAGGACAATGGTAGAACACTGTATAGTATTTCACTTCTTGGGATTTTCAGTGCATGTGTacccaattatttttaataataatcaataaagaatgAAACGATGAAA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070620-25 Predicted to enable ATP binding activity; protein serine kinase activity; and protein threonine kinase activity. Predicted to act upstream of or within intracellular signal transduction and protein phosphorylation. Orthologous to human OXSR1 (oxidative stress responsive kinase 1).

Ensembl:

ensembl_id ENSDART00000047073

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030862 lncRNA upstream 81390 23613106 ~ 23620223 (+) True XLOC_015424
TCONS_00033533 lncRNA upstream 92337 23541727 ~ 23609276 (+) False XLOC_015422
TCONS_00033537 lncRNA downstream 46313 23772918 ~ 23779429 (+) True XLOC_015428
TCONS_00033538 lncRNA downstream 209930 23936535 ~ 23940330 (+) True XLOC_015432
TCONS_00033539 lncRNA downstream 296193 24022798 ~ 24024448 (+) True XLOC_015434
TCONS_00030881 lncRNA downstream 534612 24261217 ~ 24261296 (+) True XLOC_015437
TCONS_00033540 lncRNA downstream 757668 24484273 ~ 24488154 (+) False XLOC_015443
TCONS_00030861 mRNA upstream 81394 23613040 ~ 23620219 (+) False XLOC_015424
TCONS_00030860 mRNA upstream 217265 23482798 ~ 23484348 (+) True XLOC_015421
TCONS_00030857 mRNA upstream 339680 23351454 ~ 23361933 (+) False XLOC_015417
TCONS_00030866 mRNA downstream 4589 23731194 ~ 23745290 (+) True XLOC_015427
TCONS_00030867 mRNA downstream 64143 23790748 ~ 23805139 (+) True XLOC_015429
TCONS_00030868 mRNA downstream 82035 23808640 ~ 23820280 (+) True XLOC_015430
TCONS_00030869 mRNA downstream 97017 23823622 ~ 23837423 (+) True XLOC_015431
TCONS_00030871 mRNA downstream 354089 24080694 ~ 24168670 (+) False XLOC_015435
TCONS_00030864 other upstream 21624 23679873 ~ 23679989 (+) True XLOC_015426
TCONS_00030856 other upstream 426832 23274332 ~ 23274781 (+) True XLOC_015415
TCONS_00030855 other upstream 443716 23257777 ~ 23257897 (+) True XLOC_015416
TCONS_00030841 other upstream 710092 22986282 ~ 22991521 (+) True XLOC_015408
TCONS_00030832 other upstream 1034913 22660071 ~ 22666700 (+) True XLOC_015401
TCONS_00030870 other downstream 286645 24013250 ~ 24014943 (+) True XLOC_015433
TCONS_00030885 other downstream 621984 24348589 ~ 24351040 (+) True XLOC_015440
TCONS_00030891 other downstream 757684 24484289 ~ 24497841 (+) True XLOC_015443
TCONS_00030897 other downstream 813442 24540047 ~ 24540765 (+) False XLOC_015445
TCONS_00030898 other downstream 813604 24540209 ~ 24540725 (+) True XLOC_015445

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000004_07306344_07318193.mRNA True 1975 mRNA 0.46 18 CI01000004 7306257 ~ 7318449 (+)
bowfin (Amia calva) AMCG00019134 True 6192 mRNA 0.41 13 CM030124.1 5177893 ~ 5202366 (-)