XLOC_015431 (si:dkey-24c2.9)


Basic Information

Item Value
gene id XLOC_015431
gene name si:dkey-24c2.9
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 23823622 ~ 23837423 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030869
GCTTTGCATGGGGTCTAAAAACTGTGTTCTAGTGCAGGACATGAGGATCAACAACACGCCGAATCTAAGGTTTCTCCGGTAACCGGTCCTGAGGAAAAACCTCAGGTCTGTACTCGTGTATGTACACGATGCGACAAATATGCGGCCTCCTCATCACACTTTTGTTTGCTGAGACAGTTGCTGAAAAAAAGTACTGTTGGTACTTTGAAGGAGATTATCCTGTGTATTTCATatGCAAGGCATATGAGGACTGCTGTGGCACAGAATGCTGCGTTCGAGCTCTTGCTGTTCAAAGAATATGGTATTTCTGGTTACTGCTGATTATTGCCATTTTATGCTGCTGCAGCACTGGCTACTTCATCCGCAGAAGGGCTCACCCTTACCCTCCATCCGACAGGCCTGAGTTTACTGTAGCCTTCAGCAGAAACCCTATCATAACACCTGGCCTGCGTCAGACTGGCTTTCACAGTTATGGAGACTCAGAAACCGCAGTCATTTCCACTGTCTTCCCTGCAGTGAGTGCGCTTTCCTACTACAGCCAGGGtcctcatcctcatcatcctcCTCCTTCATATGAGCAGGTCATGCAGGACTCACAGAAAAAATAGAAATATCAGCAGGAGAACACTGAGTCCTGAGGATCAACCCTACAGCACTGTGACCTTTACTTACAGCCTTCAAGACACTGACACAGCTCAACAGCTCAGACAAGACTGGAGGAAACAAACTGGAACAAATGTaagaatacaaaacaaaaatgaaaagatTGAAATGGCTTCCATTTCTTTGTCAGCATAGAAAACCAAAAGGTTTAAAGGTTCAAAAGTTTAAAGTTCCTCTTTTTTGAATGGTGTAAAAATGCACTTCAGTGTCTGGTATGTGTTCTAAACTTGTACAGTAGCTTTAGTAAGAACTGCTGCATTTTAGATTTGATTATACCAATTACtagagttttttaaaaataaattactgaatcATTTTATTATCTGTATCCATAAGTTATATAAATCAAATTCACagtggaatgttttttttttcttaataaaaatgaaagttctaTATATTTTGCATA

Function

symbol description
si:dkey-24c2.9 Predicted to be located in cytoplasmic vesicle membrane. Predicted to be integral component of membrane. Predicted to be integral component of organelle membrane.

GO:

id name namespace
GO:0031301 integral component of organelle membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0030659 cytoplasmic vesicle membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-476 Predicted to be located in cytoplasmic vesicle membrane. Predicted to be integral component of membrane. Predicted to be integral component of organelle membrane.

Ensembl:

ensembl_id ENSDARG00000038979

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030869 True 1072 mRNA 0.41 5 23823622 23837423

Neighbor

gene id symbol gene type direction distance location
XLOC_015430 gorasp1a coding upstream 3342 23808640 ~ 23820280 (+)
XLOC_015429 csrnp1a coding upstream 18483 23790748 ~ 23805139 (+)
XLOC_015428 NA coding upstream 44193 23772918 ~ 23779429 (+)
XLOC_015427 slc22a13a coding upstream 78332 23731194 ~ 23745290 (+)
XLOC_015425 oxsr1a coding upstream 97017 23677179 ~ 23726605 (+)
XLOC_015432 NA coding downstream 99112 23936535 ~ 23940330 (+)
XLOC_015433 CR788285.2 coding downstream 175827 24013250 ~ 24014943 (+)
XLOC_015434 NA coding downstream 185375 24022798 ~ 24024448 (+)
XLOC_015435 kcnh2a coding downstream 243271 24080694 ~ 24168670 (+)
XLOC_015436 map4l coding downstream 339583 24177006 ~ 24252506 (+)
XLOC_015426 BX649335.1 non-coding upstream 143633 23679873 ~ 23679989 (+)
XLOC_015422 NA non-coding upstream 214346 23541727 ~ 23609276 (+)
XLOC_015423 NA non-coding upstream 266107 23550186 ~ 23557515 (+)
XLOC_015420 NA non-coding upstream 372221 23450772 ~ 23451401 (+)
XLOC_015437 BX000358.1 non-coding downstream 423794 24261217 ~ 24261296 (+)
XLOC_015440 CR384062.1 non-coding downstream 511166 24348589 ~ 24351040 (+)

Expression


Co-expression Network