XLOC_015427 (slc22a13a)


Basic Information

Item Value
gene id XLOC_015427
gene name slc22a13a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 23731194 ~ 23745290 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030866
ATGGCCAATTTTGGGGAGATTTTAGAAGCTATTGGAGATTTTGGACTCTTTCAGAAGCTTCTGTTGTTTGCCTTGTGCTTTCCAAACCTTATATTGCCTTTTCAGTTATCCAGCCTTGTGTTCAACCATGCAGACACCAACCATCACTGCAACACTGACTGGATCCTTAAGGCTGATCCCAATCTGACGAAAGAAGAGCAGCTCAACCTGACTCTGCCCAGGCTCTCGGATGGCTCTTTTAATCCCTGTCAGATGTACAAGCCGGTGGATTGGAATCTGTCTGCTATACAGGAATATGGGCTGAATCAAACCACCACTTGTACTGATGGATGGGTGCATAATGATACTATTTATGAGGCAACCATTGTCACTGATTTTGACCTTGTTtgtgaaaatgttaatatatttcgGGGCGCTCAAACCGTTTTCTTCGCTGGAGTGCTGGTTGGAGCTATACTTTTTGGGCCCTTTTCGGAATCGTTTGGCCGTAAACGAGCCACACAGATTCCTATGGTGCTGATGCTCATATTCACAGTGGTGACTGGTCTCTCTCCGAACTTTTACGTGTACCTCGTGTCCCAGTTCATTAATGGTGTTGGTCTTGGAGGATTTCGGATCAACAGTATTATCCTTGCCTCCGAGTGGATTGGAGTCGCCCAGAGATCATATGCAGCATGTCTCAGTCAGGTCCTGGCCGCTTTAGGACAGGTCATGTTTCTTGCTGTTGTGTATTTTGTCAGGGACTGGAGGTTGGACCAGTTCATAATGGCTGGTCCGATTGGAATTGTGGTCATCTACATATGGTTTCTACCAGAGTCTGCCAGATGGCTTCTTGACCGTGGACGAACTAAAGATGCGAAAAAACTTATTCAGAAGGCAGCGGCGGTCAACAAACGTGCAGTTCCTGAATCATTAGTGGAGGAGGTCCTAAAAGAAAAGCCTGTTGAAAAAGGAGGTATTAAAATTCTCTTTGGTTCCCGTGTGCTGAGGAAATATTTTCTAGCCATTACCTTTGCATGGTGTGCTTTAAATTTAGCTTACTACAGCCTGTCTCTGAACGTGGGGAAGTTTGGACTTGATATATTTCTTACTCAGCTGATATTTGGCTTGTCTGAGATCCCCGTCCACTTCCTATGCATGTGGTCTCTGGAGGTGGTTGGGAGGAAGCCGTCTCTGATCGTCTCTCTCGTGTTGGGAGGATGTCTCTGTCTCCTGACTGTAGCAGTTCCTCAAAACAGCTCCATCGCCATCGCTGTTCTTGCCACATGTGGAAGGTTCCTCATGAATGCAGCAGGGAGTGTTTGCAACGTTTATTTTCAAGAACTGTTCCCCACATCTATTCGTCAGACAGCCACAGGTTTGGGCTCCACCGCTGCACGAGCCGGGAGTATGCTGTCTCCTGTGGTGAACATGTTGGAAATTTTCCACTTCTCTATCCCAATGGTGGTGATCTCCAGCCTGGCATTAGCAAGTGGGGTAACGGCCTTCCTGCTGCCTGAGACCAGACGCACTGAACTGCCTGCTTCCACTGAGGAGGCAGAGGGAAAGAGGAAACCGAAACTAACTAGTCCTGCAACAAGAGACTGCGAAGACACCAAAGTAACCAAGTTATAATGTCTTCTCGAAAAAATTGTCAGTATTTCATTCCATAAAAGACTTTAAAGTGAAGTGTGCTGCTGTTTGTTTGCATTCATCAACACATGTAACATTAGTAGATTCTGTGTTttgttaatatgtaaaataatatgcAATAAACATGATGTAaattattgttttcttta

Function

symbol description
slc22a13a Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in eye; gill; heart; and intestine. Orthologous to human SLC22A13 (solute carrier family 22 member 13).

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-473 Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in eye; gill; heart; and intestine. Orthologous to human SLC22A13 (solute carrier family 22 member 13).

Ensembl:

ensembl_id ENSDARG00000056551

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030866 True 1781 mRNA 0.45 10 23731194 23745290

Neighbor

gene id symbol gene type direction distance location
XLOC_015425 oxsr1a coding upstream 4589 23677179 ~ 23726605 (+)
XLOC_015426 BX649335.1 coding upstream 51205 23679873 ~ 23679989 (+)
XLOC_015424 rpp40 coding upstream 110971 23613040 ~ 23620223 (+)
XLOC_015422 NA coding upstream 121918 23541727 ~ 23609276 (+)
XLOC_015423 NA coding upstream 173679 23550186 ~ 23557515 (+)
XLOC_015428 NA coding downstream 27628 23772918 ~ 23779429 (+)
XLOC_015429 csrnp1a coding downstream 45458 23790748 ~ 23805139 (+)
XLOC_015430 gorasp1a coding downstream 63350 23808640 ~ 23820280 (+)
XLOC_015431 si:dkey-24c2.9 coding downstream 78332 23823622 ~ 23837423 (+)
XLOC_015432 NA coding downstream 191245 23936535 ~ 23940330 (+)
XLOC_015418 NA non-coding upstream 251948 23406453 ~ 23479246 (+)
XLOC_015420 NA non-coding upstream 279793 23450772 ~ 23451401 (+)
XLOC_015433 CR788285.2 non-coding downstream 267960 24013250 ~ 24014943 (+)
XLOC_015434 NA non-coding downstream 277508 24022798 ~ 24024448 (+)
XLOC_015437 BX000358.1 non-coding downstream 515927 24261217 ~ 24261296 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_07322380_07326368 NA coding CI01000004 null 7322266 ~ 7326548 (+)