RNA id: AMCG00019134


Basic Information

Item Value
RNA id AMCG00019134
length 6192
RNA type mRNA
GC content 0.41
exon number 13
gene id AMCG00019134
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 5177893 ~ 5202366 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATGTGAAGGCTGGCAATATTCTTCTCGGAGAAGACGGCTCAGTACAAATTGCagACTTCGGTGTCAGTGCCTTCCTAGCGACAGGGGGCGACATTACCAGGAATAAAGTACGGAAGACCTTTGTGGGAACCCCTTGCTGGATGGCCCCGGAGGTTATGGAGCAGGTTAGAGGTTATGACTTCAAAGCCGATATATGGAGTTTTGGGATCACGGCCATCGAATTAGCCAGCGGAGCGGCTCCTTACCATAAATACCCCCCCATGAAAGTGCTAATGCTAACCCTGCAGAACGACCCCCCAGGGCTGGAGACAGGGGTCACAGATAAAGAAATGGTGAAGAAATACGGCAAGTCCTTCAGAAAGATGATCTCCCTTTGTCTTCAAAAGGATCCAGAGAAAAGACCGACATCATCAGAGCTCTTAAAGCACAAATTCTTCCAGAAAGCAAAGAACAAAGAGTTTTTACAGGAAAAGCTACTACAGCGAGCTCCGACAATAGGCGAGAGGTCTAAAAAGGTGCGAAGGGTCCCGGGCTCCAGCGGGCGGCTCCACAAGACGGAGGACGGCGAGTGGGAGTGGAGTGACGACGAATTGGACGAGGAGAGCGAGGAAGGGAAGGCCGCAGTGGCACAGCTAAGGTCTCCGAGAGTGAAGGAAGCATCGCAAAATTCAGAGAGTCTACAGGCAGTCACCTCCAGCCTCCAGCCCCAGGCAGCGCCCAACTACCTCAGCCTGCCGGCCCGGCTCCGGCCCAGGCGTCCCTCACAAACGCTCCACCCGCTGGCCCGGCTCCAGCCCCGGCTTCAGCCCCGGCGCAAGGCCAACCAGCTGCTGCTCCGGCTGCCCAGGAATTTAAAGAAGGAATTGAATGACATACGATTTGAATTCATGCCTGGAAGAGACACGGCCGACGGCGTTTCACAAGAGCTGGTTTCCGCTGGGCTGGTTGATGGACGGGACGTAGTTATAGTTGCTGCTAATTTGCAGAAAATAGTCGATGAGCCTCAGACTAACCGGTCTGTTACTTTCAAACTGGCTTCCGGAGTCGAAGGCTCTGAAATTCCAGACGATGTTAAACTTATGGGATTTGCACAGCTCAGCATTAGTTAAACTGTAGTACGAACCACCAGGGACCTGACTTGCCtaaacaagagaaacaaacCGAAGTGCACACTTGTGCGTATTCTCTACTTTCATTGGCCTAATGAAACCACTACTGCCAAAGACAAATAAGATGCCGTCACCCCATAGGACTCGAACATCGCTTTGTAACTAGGACCGTGCGTTTAAAATGCAGCCTATAGGAATCACACTAAAACGTTtacagtgtatgtatgtttggAATGAAGCAATCATCAACATCCACCCGTGCgattatttctttttctttcttttcttcttctaatttAAAACCTGCATTTGCACAATTCGACGTTAATCCTGCAAGTCCTGGTAATGTAACAATGCCTTATCTTAAACAGTACTACTGAATAAATGGGGGGTTGTCCCCACTATAGTCATGACTTTTAATTGTAGATTGAATGTGGTTTCAGTTACTAATATTAAACTTTCCTTTAGATGCACACCTTGGGGACTTGGGACAGCTTTAGTTAGACCTAATTTGAAAGTCCTACCGTCGATCTAACTTAAATCTTTCCATTAACGAACGATATTTAAATAACAAGGCACCAGTAAGTAACACCAATGTTATTGTGATGAGCGCCGGTGTGACGTCTAACTGAGTTACTGTGCTTCATGCCTCTCTGACCGAATTTCGGTTGGCAATGTACTTGTGCCACAATGTTAGACTAGACACACAAATCAGCCTTTTCAGTATCGAactgttttcttcttcataatCTCCTCTGAACGCATTTGCCGTGAGTGCGTGTCCGAGGGCTTCCCCGTTGGGAATGGGGGGTGCTGGGATTAAATGCAGTTAATTCACTTTTCTTTCTAAATGGCTTTTGGGATACAGGTATTTGGGGATACGTCTCACAGTCCTTCACATCTCACCTCTATAACCACCTAGACAACGCGAGGCTGCCTTTCTTTAAGACCTCACGGGCCTTTCCCGTAAGTGCGCTTTGATTTGGGCGCCCACTGTTGTCGCTGGCCCGCTGTCTCCTGTCCTCAGTCAGTGTAAGGACTCTGAGGATAAAGACATGGCGCCGCACTGACTGTTCCCCGAGGTCCTGgcttattattttactgtagaGCAGTACAGGTACAGTTTGTGTGCGATCACCTGTCCTGTCCTGCCCCAACACTGGCGAGACACTCCTTAATGCACTGGCACCGAAAAACACGATTGTTTCATCACCGAATTCAGAACCGAGTGAGGAGCTTCCAGGTCATTTTACACTCCTACACTTTTTCAATATCAACAGGTACAAACTGACTCACTTCCGACTTTCAGCGCACTACGACTGTTCCTTTAATCGGCTGTTTCTTGGTCCGTTTCACAAACTCACGAGTGAAGATAATTTCAGAAAAGCTTGTGGTTTGTGTAATAACATCATATATAACCATttattgacatgttttttttccagaaagtACACTTTGAATCGTTCCACACTCACATCAGCTTTATACAGTGTGCTCTCATTTCTGATTATTACTACTTTCTACATCTGTGAATTTGTGAATTCTGTTAATTACACTTAATGAAGTTTAATCGTGTAACTGGAGCCACATGAGCGATCATTCATGCATTAGTTTGTATGTGGGTGTTAGCAGTGACTTTGATTTGGAATAATTTttcgaaaacaaaaaaaaaatgaaagtagtGCATATTAGCGAACGAGGATTAAAAACTGCATATACTTGATTTAATAACTTTACTAtagtatgtaaataataaagtttggtgttgatttttttttttattattattattattattattattattattattattattattattatattgggTGTTTTCACAGTTGGCCTTTGTATcttaggaagaaaaaaaaaatcagtgctGTGTAAGGAAACAGGAACATAACAAAACCCTTTTTATGTTGtagcgtttttgtttttcttccacagcagGTGTCGCTCACTAGAAATTGCTGTCCTTTCTGTCACCGAgggtttgttcttttttttaaatgagggTTTAAAAGCAAGCTTATTTCAtcttaaatacatgcataatgtAACTATGTTGCATGAACACTTTCAGCATCGGATTCTCACGCTGAGCACGagtgcaaaatgtttttgcagTGCCATCGAGTATCTATACATGATATTTAGGATGAATAAGACCAGGAAATGATTTggattgtgttcatttttttaataccagTTTGAACATTACAGAAGACGCAAATAAACCCTCAAAATCATCAGAATAGTGTCATTGAAGGGGCCAAGGAGAGAACTTTCATTAAAATCAGATTGAGATCTTGTCACTGTTCACACTGCCTGTACCCCTTTGATTCAGTTTGGCTCCGGTACAATAGTCCATACTCACAATTGAGATTATAGACCCCTGCCTGTGCTTTATCTGTATAGCAGTGAACTTGGGTCTAGACCAAATCCAAACATTGATCTCCCTGCAAAtaacaaagtacaaacctgtatcctgTTACATTTTGATCTAGTGTCAAAGCCACTTTCTGCTCTATGTGATGGGGTACAAGTGTGTAATTGAGCTCAAATCAAAGTGTCGATCGGGTCTCAGAGGTCTGGCTGCAGCACCTCTCACCCCAGTCTAAGAGATTTGTTCAGCGTTTCCTTTCAAGCGTTACAGCTTCGATTTTTTATCGGTTTCTAAATGAAAACTACCCTAAATTGTACATGTTTGGTCTGTTTATTCAGTTCAGCCAACATAACTAAAGATGCCATTGCAAACATATTCCTGCACTACTTCTTAGCAGCTGCATCCTACGTTTGGTACAATGCAGTGCTGCTTTAGCGATTCATGTTGTAAATATCACCGATTCAATAAAAACTCCAAACCCGTCCCAGGGCGAACACTGTGCACTCTCCCCCCTGTTATTTATCCTTGTGGAGTCATTTTCACTATTCACACGTGGGAGGAATTAATTGCCATCTTCTGTACATTGGTTAATGATGTTTAAGGTGAAATCATGGTAAAGCCCAGTGAGAAATATAGGGTAGTTATTTGcagcagaaaaatacaaaaaaaatgaaaatgttaaatataaatttctttaaaataggTTCTTTTACAAAATTCAACTATAGATGCCCAAGCAATTTACCCGAAAACAGTACTTgaatccaatatatatataaatatatattaaaaacaaatcctgacAATGCCACTATATCATATTTTGATATTCCGATCATTATATTCGCCAAAATTGTCCGACCAGAAAATACACCTTAAACTGTGTTTAATAGATCGTTTTAAACGCAAATGTTACCCAGTtttccaaacacattttttgttgcTGGGGCATTTTCATGTTGGCTTGGCTCAGACAACAAAAGCATGAACATGTGTAGTATTTAATTAGTATTACTGCTGCGGGGCCGGTAACACGACACTTGTCAAGTATACCCAAACCCTTATGTATTTAGTGCCATTCCCCTGTGTGTTTATCCGTGACATTCACATACTTTTCGGACGGAGTGTAGAATGGTGCGTTCTGGATTGAACCGCAACTCCAACAGCatgatttttgattttgttttattatttagttttctctctctccttaatTGTCATCAATCACCTgtaattaaaagagaaacagCAATGCGATGGATTACCTTGGCATATGACTTTGTTTATTGTAGTTTATAACACAACGCTGTAAACTATCTCAGTTTTTattagtttctttttcttttcttttgtggttTTTGGTTTTGGATTTCAGTGCATGTTTCcctcattatttttaatcaataaagtATGACCTTATCAGTTGCCTCTCACTGCTGTGTGTCTTTTGAAGCCGAGACCAATTAGATCAACTGTTTCCAGAGTGATATTATTCCAAAcctaaattaatgtaatacatattaatagTGTGTCTCAAGTTTAAAGTCATGAAGGGTTTCTTGTAAAACAgcaattgcaaaaaacaaatcgATCGGATCTTCACAACCATTTGTAAGACTCGTTCACGGAGAGAGGATGAAATATTGCAATTCGTGCTTTACTGTTGTCAAGCACCTTAATTAAAGTATCTGCAGCCTTTCCAGTATCTGTTTTCAGCCGAAGCTCTGCTAGGAGAAAACACTTGAACCAGAACCTCAAGtacttaattttaataacattacagCCTTATTTGAGTTACCTGAATGCTCTGTCCAGGTCAAGAGGCATTGTATTAATTCTGAGGTGTGACGGGTGGTTTTGGTCTCTTGACACAAGTTAATATTCACCTTTGCTTCAGCTTACAAGACACATTAACAGAACCCCGTATATaggtcttatttattttgattaagattgattttataataatgtccttttaaatgttcattactTTAAATGGTCATcacaggagaaaaacaacaactttgaggTTCGTTATTGATTTCAATTTGTAACATCTCCTGTGCGATTTGACtttgttcaaacaaaacaatttttttgtgttgctttggGAAAAGAGTGATTAGGATTCTGCAGAGAATCCAGAGTGGAAATTCGATTTTCTGTTTTCACATGCAAGTGAAAAAGGGGATGTTTGAGCGGTCTGCCCAGAATGGATGAATAGACTGCAGACTGTCAAGGGATTCAAAAACTTTCCCAGAGTTTCAATTCTCCAAGTGTCTATGTGAAAGTAATATGTAGCCCAAACTGATACTACCGTAACAGTATATTGCTGATAACATGACGAGAAATGTCGGGTGGAAGTGGAAACTGGGCATCTAAGGAGGTTCAGAACATTCAGAGTGAAATTCTGTAATGATGATCCTGTACTAATTGCATCACTAATACTGCATCACAGCAGCAATCAGTTTGTGATACGGACATAGTCTCCACCAACTAggccttttgttgttttttcaataggAATAAAAGCAGTCAGAAACCCGTCTActgtacacaaataaatcaaactaaaatgcattactccagtttttgtttcattttgtgtctCCTGGTTATACCTGAAcctaccattttaaaatataattacgaAGTGTCATTTGTATTGGAGTACTttcaaatgcataataaat

Function

GO: NA

KEGG:

id description
K08835 OXSR1, STK39; serine/threonine-protein kinase OSR1/STK39

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39592 lncRNA downstream 191509 4941059 ~ 4986384 (-) True AMCG00019128
TU39509 lncRNA downstream 499826 4677643 ~ 4678067 (-) True G31572
TU39494 lncRNA downstream 570036 4607563 ~ 4607857 (-) True G31558
TU39459 lncRNA downstream 812492 4365162 ~ 4365401 (-) True G31526
TU39458 lncRNA downstream 812849 4364196 ~ 4365044 (-) True G31525
TU39751 lncRNA upstream 216630 5418996 ~ 5511930 (-) True G31774
TU39752 lncRNA upstream 216630 5418996 ~ 5444209 (-) False G31774
TU39766 lncRNA upstream 337754 5540120 ~ 5540948 (-) True G31784
TU39790 lncRNA upstream 370431 5572797 ~ 5574265 (-) True G31803
TU39830 lncRNA upstream 547521 5749887 ~ 5752086 (-) True G31825
AMCG00019137 mRNA downstream 949 5171620 ~ 5176944 (-) True AMCG00019137
AMCG00019130 mRNA downstream 171449 4989723 ~ 5006444 (-) True AMCG00019130
AMCG00019128 mRNA downstream 228505 4943738 ~ 4949388 (-) False AMCG00019128
AMCG00019129 mRNA downstream 237226 4932349 ~ 4940667 (-) True AMCG00019129
AMCG00019124 mRNA downstream 302548 4857920 ~ 4875345 (-) True AMCG00019124
AMCG00019138 mRNA upstream 34035 5236401 ~ 5243714 (-) True AMCG00019138
AMCG00019135 mRNA upstream 59349 5261715 ~ 5267644 (-) True AMCG00019135
AMCG00019136 mRNA upstream 66872 5269238 ~ 5278716 (-) True AMCG00019136
AMCG00019142 mRNA upstream 123675 5326041 ~ 5349514 (-) True AMCG00019142
AMCG00019144 mRNA upstream 188699 5391065 ~ 5405706 (-) True AMCG00019144
TU39603 other downstream 241897 4932838 ~ 4935996 (-) False AMCG00019129
TU38988 other downstream 2999243 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 3094622 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 3094622 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 3467350 1705899 ~ 1710543 (-) False G31035
TU41485 other upstream 8459750 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 9289525 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 9289525 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 9749476 14951842 ~ 14991996 (-) True G33259
TU41832 other upstream 10490116 15692482 ~ 15721452 (-) True G33381

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00030865 True 7037 mRNA 0.38 18 NC_007113.7 23701613 ~ 23726605 (+)