RNA id: AMCG00019129


Basic Information

Item Value
RNA id AMCG00019129
length 1389
RNA type mRNA
GC content 0.55
exon number 8
gene id AMCG00019129
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 4932349 ~ 4940667 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGCAGCCCGTCCTGCAGCGAGAGGAGCTCCGAGCTGGGCAGCTGCTGCAGGTCCTGGGACGACAGCAGCAACTACTCGGCCCTGCACTTCGGCAGCATCTCGGAGGTGGACAGCACTGAAGAGGATAAGCGAATCGCCAGTAAAGCGGTGGCCTATGTCATCCAGAGCACAAGAAGAGGAATCATCCCCCTCTGTTCTAATGTGGCTCAACTCATGAAGTCCAAAAGGAGgcTTGAACGAATAGTCCAGTCCCAGCAGATGAAAATCAGCCGATTACAGAAAGATGCTCATCCCTTCGGACCTCAGGCCTTGTCCAGCTCACGGGACAGATTGCCTGAGCCCACTGACTCAACACTGAAGTCACGCTCCGAGCAGACTACAGCTATCTGCCACGGGGACCCACCTGATGACTCGGCACTGAGCCCAATGGCAGTGAAGACCGAGTCCTGTCGAAATGACCAGCTAATGCAGATAAATCCTGGGTCGAGTTCTGCCGACACCACGCTGGACTCGGACCTACCAGCGAAAGTGGAACCAGCAGGGAAGTCCAAGATGCTGGTGTCCAAGGAAGTTCAGGTGGAGAGCCCCTGTCTCCTCATGGAGAAGACGTGTGAAGATCGATTCATGGAAAGTAGCGCTGTCTTCCACAGGGACTCCAGCTTGGGTTGGTCTCTGTTTCCCTTTCCTATGATCGGCTGCAAGTGCACCAGCTGCTTGTGCTTCTTCAGCAGACACGTCAAGGGCAGGAAGCACAACGCAAAGGAGTTTAAATCTCTGCTCAATTTTCAGAGAAAAAAGGTGCAGGTGAGCATACAAGACTACATCATTGTTAACGGAAATCAATCTGGAACGGTCCACTATATCGGACACCTGGACGACGCCGGCACTGCAAACGCAGTCTTCCTCGGAGTGGAACTGGACGAACAAAGTGGAACACATGATGGCGTTTTCAAAGGAAAGAGATATTATCAGTGCTTCGATAACTGTGGGCACTTTGTTCCCGTTCACGAAGTGTGTTACAGAATTAGTCGCAAGTATAAGCCCGAAAAATTAACCTCTTCAGCTCCGCCCCGTCTTCAGCGAAGGTCCTCCACGGGCTCGATCAGACCTTCTGGCCAGAGCAGCTGCAACGGCAGTCGAGTTGACCTCGGCCACCAGACGGTCATCGAGAAGAAAAGTCGAAGTCCCAGCGAGCCGGTGCCGGGAAATGAGAGATCACCGAGGAGAACGAACAGGGGCAGTGTTGTCCGTAGGGGGCAGGAGGCCGGGCGGCTCGGGCCAGCCCGAGGAGAGATGCAGCTGCTCGCCcatttcctctccctcttcacCCCCAACCCGCCCTTCAAGATCTCGACACTGAGGGCCCCAGCTGCAGAGCCAACTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39509 lncRNA downstream 254282 4677643 ~ 4678067 (-) True G31572
TU39494 lncRNA downstream 324492 4607563 ~ 4607857 (-) True G31558
TU39459 lncRNA downstream 566948 4365162 ~ 4365401 (-) True G31526
TU39458 lncRNA downstream 567305 4364196 ~ 4365044 (-) True G31525
TU39456 lncRNA downstream 572003 4360107 ~ 4360346 (-) True G31523
TU39592 lncRNA upstream 392 4941059 ~ 4986384 (-) True AMCG00019128
TU39751 lncRNA upstream 478329 5418996 ~ 5511930 (-) True G31774
TU39752 lncRNA upstream 478329 5418996 ~ 5444209 (-) False G31774
TU39766 lncRNA upstream 599453 5540120 ~ 5540948 (-) True G31784
TU39790 lncRNA upstream 632130 5572797 ~ 5574265 (-) True G31803
AMCG00019124 mRNA downstream 57004 4857920 ~ 4875345 (-) True AMCG00019124
AMCG00019122 mRNA downstream 91653 4823949 ~ 4840696 (-) True AMCG00019122
AMCG00019123 mRNA downstream 140426 4767469 ~ 4791923 (-) True AMCG00019123
AMCG00019116 mRNA downstream 456482 4472156 ~ 4475867 (-) True AMCG00019116
AMCG00019117 mRNA downstream 464301 4457460 ~ 4468048 (-) True AMCG00019117
AMCG00019128 mRNA upstream 3071 4943738 ~ 4949388 (-) False AMCG00019128
AMCG00019130 mRNA upstream 49056 4989723 ~ 5006444 (-) True AMCG00019130
AMCG00019137 mRNA upstream 230953 5171620 ~ 5176944 (-) True AMCG00019137
AMCG00019134 mRNA upstream 237226 5177893 ~ 5202366 (-) True AMCG00019134
AMCG00019138 mRNA upstream 295734 5236401 ~ 5243714 (-) True AMCG00019138
TU38988 other downstream 2753699 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 2849078 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 2849078 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 3221806 1705899 ~ 1710543 (-) False G31035
TU38662 other downstream 3608753 1321614 ~ 1323596 (-) True AMCG00019034
TU41485 other upstream 8721449 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 9551224 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 9551224 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 10011175 14951842 ~ 14991996 (-) True G33259
TU41832 other upstream 10751815 15692482 ~ 15721452 (-) True G33381

Expression Profile