RNA id: TCONS_00033539


Basic Information

Item Value
RNA id TCONS_00033539
length 1019
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id XLOC_015434
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 24022798 ~ 24024448 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTAACTGGGTGCATAACCCAAGTCAACGTGCCAATCAGGGCTGGAATAGAGCATGATTGTTTACCCCATATAAGCCAATCAgtacccatctctgggtaactaAAAGAGGAATTTTGTGTATCATTTCTGGTACCGTCCCCTTTCAGCATGGGACACTTGATTGTGGTGACTGCAAGATAGTGGCAGGGTGATTCTTTTGTTGTCTTTAACTGTTTAAAGCCAACTTCAAAAATGGACCTATGAACAGCTGGAATTCTGCATGGTGAAAAATCGTGTGAGGAGTACTAGTTAGTTCTCCCggttttacagtacatttaggGGTTTTGATTTGCTGTTAAGACTAAACTGATGTAACAAGTGCTGAGTGAACCTGTTTTGCACATCCACTGACACCCGAAAATGGTCCAGTGATGTCCAAAAGGGATCCCAAAAAATCAGATGTTTAGAAACCAAACCTGTTTTGGATGTCCACTGACATGCAAAAGTGGTCCACAGTTTTAGAAATCAATCCCTCTCAATTAAACATTGAGACACTAAACACATTTTGCACATCCACTGACATCCAAAAGGGGTCAGCTGGCATCCAGAAATGGTCCACTGATGTCCGAAAATGGTTCATTGACATTTGAAAGAGATCCCTACTAAACAGAAGCTGAAACACGAACTTGAACATTCACTGACATCTGAAAGCGGTCCACTGATGTCCCAAATCTGTCCTTATTATCAGATATTAAGATTCCGAACCTGTTTCCACATCAGCTGAAGTGGTCCACTGACATTTGAAAGTGGTCTGTCCTGATCAGATGTCGAGACAGCGAAAGTGTTTTGTACATCCACCAACATCCAAAAGCAGTCCAATGGCATCTGAAAACAGTCCACTGATGTCCGAAGGCTGCCCACTGTCATCCAAAAATGGTCCACTGATGTCCAAAATCGGTCCCTACTAATCAGATTTTGAGATTCCGAGGCCCCTACTGAACAGACACTGAATCTGTTTTGCATGTCCACTGAAGTCCG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033538 lncRNA upstream 82468 23936535 ~ 23940330 (+) True XLOC_015432
TCONS_00033537 lncRNA upstream 243369 23772918 ~ 23779429 (+) True XLOC_015428
TCONS_00030862 lncRNA upstream 402575 23613106 ~ 23620223 (+) True XLOC_015424
TCONS_00033534 lncRNA upstream 413522 23544273 ~ 23609276 (+) False XLOC_015422
TCONS_00030881 lncRNA downstream 236769 24261217 ~ 24261296 (+) True XLOC_015437
TCONS_00033540 lncRNA downstream 459825 24484273 ~ 24488154 (+) False XLOC_015443
TCONS_00030890 lncRNA downstream 459827 24484275 ~ 24488154 (+) False XLOC_015443
TCONS_00030894 lncRNA downstream 483322 24507770 ~ 24509698 (+) False XLOC_015444
TCONS_00033541 lncRNA downstream 578844 24603292 ~ 24612068 (+) True XLOC_015446
TCONS_00030869 mRNA upstream 185375 23823622 ~ 23837423 (+) True XLOC_015431
TCONS_00030868 mRNA upstream 202518 23808640 ~ 23820280 (+) True XLOC_015430
TCONS_00030867 mRNA upstream 217659 23790748 ~ 23805139 (+) True XLOC_015429
TCONS_00030866 mRNA upstream 277508 23731194 ~ 23745290 (+) True XLOC_015427
TCONS_00030865 mRNA upstream 296193 23701613 ~ 23726605 (+) True XLOC_015425
TCONS_00030871 mRNA downstream 56246 24080694 ~ 24168670 (+) False XLOC_015435
TCONS_00030872 mRNA downstream 56602 24081050 ~ 24165596 (+) True XLOC_015435
TCONS_00030873 mRNA downstream 152558 24177006 ~ 24252336 (+) False XLOC_015436
TCONS_00030874 mRNA downstream 152742 24177190 ~ 24222094 (+) False XLOC_015436
TCONS_00030877 mRNA downstream 164054 24188502 ~ 24252506 (+) False XLOC_015436
TCONS_00030870 other upstream 7855 24013250 ~ 24014943 (+) True XLOC_015433
TCONS_00030864 other upstream 342809 23679873 ~ 23679989 (+) True XLOC_015426
TCONS_00030856 other upstream 748017 23274332 ~ 23274781 (+) True XLOC_015415
TCONS_00030855 other upstream 764901 23257777 ~ 23257897 (+) True XLOC_015416
TCONS_00030841 other upstream 1031277 22986282 ~ 22991521 (+) True XLOC_015408
TCONS_00030885 other downstream 324141 24348589 ~ 24351040 (+) True XLOC_015440
TCONS_00030891 other downstream 459841 24484289 ~ 24497841 (+) True XLOC_015443
TCONS_00030897 other downstream 515599 24540047 ~ 24540765 (+) False XLOC_015445
TCONS_00030898 other downstream 515761 24540209 ~ 24540725 (+) True XLOC_015445
TCONS_00030908 other downstream 818139 24842587 ~ 24845999 (+) True XLOC_015452