Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00030908 |
| length | 898 |
| RNA type | processed_transcript |
| GC content | 0.40 |
| exon number | 3 |
| gene id | XLOC_015452 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007113.7 |
| NCBI id | CM002886.2 |
| chromosome length | 59640629 |
| location | 24781026 ~ 24866649 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0007165 | signal transduction | biological_process |
| GO:0048471 | perinuclear region of cytoplasm | cellular_component |
| GO:0005829 | cytosol | cellular_component |
| GO:0005575 | cellular_component | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0016787 | hydrolase activity | molecular_function |
| GO:0004114 | 3',5'-cyclic-nucleotide phosphodiesterase activity | molecular_function |
| GO:0004115 | 3',5'-cyclic-AMP phosphodiesterase activity | molecular_function |
| GO:0008081 | phosphoric diester hydrolase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-070912-373 | Predicted to enable 3',5'-cyclic-AMP phosphodiesterase activity. Predicted to be involved in signal transduction. Predicted to be active in cytosol; nucleus; and perinuclear region of cytoplasm. Orthologous to human PDE4C (phosphodiesterase 4C). |
| ensembl_id | ENSDART00000146402 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00030903 | lncRNA | upstream | 77999 | 24762638 ~ 24764588 (+) | True | XLOC_015450 |
| TCONS_00033542 | lncRNA | upstream | 121800 | 24716314 ~ 24720787 (+) | True | XLOC_015449 |
| TCONS_00033541 | lncRNA | upstream | 230519 | 24603292 ~ 24612068 (+) | True | XLOC_015446 |
| TCONS_00030894 | lncRNA | upstream | 332889 | 24507770 ~ 24509698 (+) | False | XLOC_015444 |
| TCONS_00033540 | lncRNA | upstream | 354433 | 24484273 ~ 24488154 (+) | False | XLOC_015443 |
| TCONS_00033543 | lncRNA | downstream | 57667 | 24903666 ~ 24906615 (+) | True | XLOC_015455 |
| TCONS_00033263 | lncRNA | downstream | 66294 | 24912293 ~ 24927754 (+) | True | XLOC_015456 |
| TCONS_00030918 | lncRNA | downstream | 284524 | 25130523 ~ 25137789 (+) | True | XLOC_015461 |
| TCONS_00030924 | lncRNA | downstream | 469659 | 25315658 ~ 25382341 (+) | False | XLOC_015463 |
| TCONS_00030930 | lncRNA | downstream | 988096 | 25834095 ~ 25836832 (+) | True | XLOC_015465 |
| TCONS_00030904 | mRNA | upstream | 63675 | 24770435 ~ 24778912 (+) | True | XLOC_015451 |
| TCONS_00030902 | mRNA | upstream | 75117 | 24762567 ~ 24767470 (+) | False | XLOC_015450 |
| TCONS_00030901 | mRNA | upstream | 87240 | 24722771 ~ 24755347 (+) | True | XLOC_015448 |
| TCONS_00030900 | mRNA | upstream | 94212 | 24700922 ~ 24748375 (+) | False | XLOC_015448 |
| TCONS_00030899 | mRNA | upstream | 159222 | 24638367 ~ 24683365 (+) | True | XLOC_015447 |
| TCONS_00030909 | mRNA | downstream | 21535 | 24867534 ~ 24878813 (+) | False | XLOC_015453 |
| TCONS_00030910 | mRNA | downstream | 22011 | 24868010 ~ 24878659 (+) | True | XLOC_015453 |
| TCONS_00030911 | mRNA | downstream | 39988 | 24885987 ~ 24886752 (+) | True | XLOC_015454 |
| TCONS_00030912 | mRNA | downstream | 85678 | 24931677 ~ 24932753 (+) | True | XLOC_015457 |
| TCONS_00030913 | mRNA | downstream | 90767 | 24936766 ~ 24944819 (+) | True | XLOC_015458 |
| TCONS_00030897 | other | upstream | 301822 | 24540047 ~ 24540765 (+) | False | XLOC_015445 |
| TCONS_00030898 | other | upstream | 301862 | 24540209 ~ 24540725 (+) | True | XLOC_015445 |
| TCONS_00030891 | other | upstream | 344746 | 24484289 ~ 24497841 (+) | True | XLOC_015443 |
| TCONS_00030885 | other | upstream | 491547 | 24348589 ~ 24351040 (+) | True | XLOC_015440 |
| TCONS_00030870 | other | upstream | 827644 | 24013250 ~ 24014943 (+) | True | XLOC_015433 |
| TCONS_00030940 | other | downstream | 1188176 | 26034175 ~ 26039606 (+) | True | XLOC_015468 |
| TCONS_00030946 | other | downstream | 1440466 | 26286465 ~ 26287505 (+) | True | XLOC_015473 |
| TCONS_00030957 | other | downstream | 1652535 | 26498534 ~ 26501294 (+) | False | XLOC_015477 |
| TCONS_00030958 | other | downstream | 1652562 | 26498561 ~ 26501275 (+) | False | XLOC_015477 |
| TCONS_00030959 | other | downstream | 1652563 | 26498562 ~ 26501305 (+) | False | XLOC_015477 |
