RNA id: TCONS_00030911


Basic Information

Item Value
RNA id TCONS_00030911
length 423
RNA type mRNA
GC content 0.45
exon number 2
gene id XLOC_015454
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 24885987 ~ 24886752 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACCTGTAAGAAAACCTACTGCACAATGAAGGAGCTCATCTGCCATCTGACGGCGGAGCATGTTAATGTGTCCGGAGAATCCAATTATGTGTGTTTATGGAACGATTGCTCCCGTCAAAGGACTCCATTTAAGGCCAAGTACAAACTGATCAATCATTTAAGGGTCCACACGGGAGAAAAGCCCTTTCTCTGTTCCTTCGGATGTGGGAAGGAGTTTGCCAGAGCGGAAAACTTGAAGATTCATGAAAGGACACATACAGGTGAAAAACCTTTCAGATGCCCTTTTGAGGCCTGTGAAAGGAGGTTTGCAAACAGCAGTGATAAACAAAAGCACATACGTGTTCATGCACCTGGCAAACAATATATGTGCATGTGCTGCAATAAGACATACTCTCATGCCAGCTCCCTCAGAAAACACACAAAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000146952

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030903 lncRNA upstream 121399 24762638 ~ 24764588 (+) True XLOC_015450
TCONS_00033542 lncRNA upstream 165200 24716314 ~ 24720787 (+) True XLOC_015449
TCONS_00033541 lncRNA upstream 273919 24603292 ~ 24612068 (+) True XLOC_015446
TCONS_00030894 lncRNA upstream 376289 24507770 ~ 24509698 (+) False XLOC_015444
TCONS_00030890 lncRNA upstream 397833 24484275 ~ 24488154 (+) False XLOC_015443
TCONS_00033543 lncRNA downstream 16914 24903666 ~ 24906615 (+) True XLOC_015455
TCONS_00033263 lncRNA downstream 25541 24912293 ~ 24927754 (+) True XLOC_015456
TCONS_00030918 lncRNA downstream 243771 25130523 ~ 25137789 (+) True XLOC_015461
TCONS_00030924 lncRNA downstream 428906 25315658 ~ 25382341 (+) False XLOC_015463
TCONS_00030930 lncRNA downstream 947343 25834095 ~ 25836832 (+) True XLOC_015465
TCONS_00030909 mRNA upstream 7174 24867534 ~ 24878813 (+) False XLOC_015453
TCONS_00030910 mRNA upstream 7328 24868010 ~ 24878659 (+) True XLOC_015453
TCONS_00030906 mRNA upstream 19338 24786765 ~ 24866649 (+) False XLOC_015452
TCONS_00030907 mRNA upstream 23026 24819790 ~ 24862961 (+) False XLOC_015452
TCONS_00030905 mRNA upstream 42754 24781026 ~ 24843233 (+) False XLOC_015452
TCONS_00030912 mRNA downstream 44925 24931677 ~ 24932753 (+) True XLOC_015457
TCONS_00030913 mRNA downstream 50014 24936766 ~ 24944819 (+) True XLOC_015458
TCONS_00030914 mRNA downstream 132635 25019387 ~ 25108587 (+) False XLOC_015459
TCONS_00030915 mRNA downstream 188097 25074849 ~ 25104965 (+) False XLOC_015459
TCONS_00030916 mRNA downstream 188097 25074849 ~ 25105483 (+) True XLOC_015459
TCONS_00030908 other upstream 39988 24842587 ~ 24845999 (+) True XLOC_015452
TCONS_00030897 other upstream 345222 24540047 ~ 24540765 (+) False XLOC_015445
TCONS_00030898 other upstream 345262 24540209 ~ 24540725 (+) True XLOC_015445
TCONS_00030891 other upstream 388146 24484289 ~ 24497841 (+) True XLOC_015443
TCONS_00030885 other upstream 534947 24348589 ~ 24351040 (+) True XLOC_015440
TCONS_00030940 other downstream 1147423 26034175 ~ 26039606 (+) True XLOC_015468
TCONS_00030946 other downstream 1399713 26286465 ~ 26287505 (+) True XLOC_015473
TCONS_00030957 other downstream 1611782 26498534 ~ 26501294 (+) False XLOC_015477
TCONS_00030958 other downstream 1611809 26498561 ~ 26501275 (+) False XLOC_015477
TCONS_00030959 other downstream 1611810 26498562 ~ 26501305 (+) False XLOC_015477

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000004_07971396_07974484.mRNA True 1195 mRNA 0.40 4 CI01000004 7971324 ~ 7974503 (+)