Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00030903 |
| length | 631 |
| lncRNA type | retained_intron |
| GC content | 0.44 |
| exon number | 3 |
| gene id | XLOC_015450 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007113.7 |
| NCBI id | CM002886.2 |
| chromosome length | 59640629 |
| location | 24762567 ~ 24767470 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0002376 | immune system process | biological_process |
| GO:0055114 | oxidation-reduction process | biological_process |
| GO:0005764 | lysosome | cellular_component |
| GO:0005576 | extracellular region | cellular_component |
| GO:0047134 | protein-disulfide reductase activity | molecular_function |
| GO:0016491 | oxidoreductase activity | molecular_function |
| GO:0016667 | oxidoreductase activity, acting on a sulfur group of donors | molecular_function |
| id | description |
|---|---|
| ko04612 | Antigen processing and presentation |
| id | description |
|---|---|
| ZDB-GENE-030131-8447 | Enables oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor and protein-disulfide reductase (NAD(P)) activity. Predicted to act upstream of or within immune system process. Predicted to be located in extracellular region. Predicted to be active in lysosome. Is expressed in cardiovascular system; digestive system; muscle; pleuroperitoneal region; and yolk syncytial layer. Orthologous to human IFI30 (IFI30 lysosomal thiol reductase). |
| ensembl_id | ENSDART00000136072 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00033542 | lncRNA | upstream | 41851 | 24716314 ~ 24720787 (+) | True | XLOC_015449 |
| TCONS_00033541 | lncRNA | upstream | 150570 | 24603292 ~ 24612068 (+) | True | XLOC_015446 |
| TCONS_00030894 | lncRNA | upstream | 252940 | 24507770 ~ 24509698 (+) | False | XLOC_015444 |
| TCONS_00033540 | lncRNA | upstream | 274484 | 24484273 ~ 24488154 (+) | False | XLOC_015443 |
| TCONS_00030890 | lncRNA | upstream | 274484 | 24484275 ~ 24488154 (+) | False | XLOC_015443 |
| TCONS_00033543 | lncRNA | downstream | 139078 | 24903666 ~ 24906615 (+) | True | XLOC_015455 |
| TCONS_00033263 | lncRNA | downstream | 147705 | 24912293 ~ 24927754 (+) | True | XLOC_015456 |
| TCONS_00030918 | lncRNA | downstream | 365935 | 25130523 ~ 25137789 (+) | True | XLOC_015461 |
| TCONS_00030924 | lncRNA | downstream | 551070 | 25315658 ~ 25382341 (+) | False | XLOC_015463 |
| TCONS_00030930 | lncRNA | downstream | 1069507 | 25834095 ~ 25836832 (+) | True | XLOC_015465 |
| TCONS_00030901 | mRNA | upstream | 7291 | 24722771 ~ 24755347 (+) | True | XLOC_015448 |
| TCONS_00030900 | mRNA | upstream | 14263 | 24700922 ~ 24748375 (+) | False | XLOC_015448 |
| TCONS_00030899 | mRNA | upstream | 79273 | 24638367 ~ 24683365 (+) | True | XLOC_015447 |
| TCONS_00030896 | mRNA | upstream | 220120 | 24536762 ~ 24542518 (+) | False | XLOC_015445 |
| TCONS_00030892 | mRNA | upstream | 252940 | 24507597 ~ 24509698 (+) | False | XLOC_015444 |
| TCONS_00030904 | mRNA | downstream | 5847 | 24770435 ~ 24778912 (+) | True | XLOC_015451 |
| TCONS_00030905 | mRNA | downstream | 16438 | 24781026 ~ 24843233 (+) | False | XLOC_015452 |
| TCONS_00030906 | mRNA | downstream | 22177 | 24786765 ~ 24866649 (+) | False | XLOC_015452 |
| TCONS_00030907 | mRNA | downstream | 55202 | 24819790 ~ 24862961 (+) | False | XLOC_015452 |
| TCONS_00030909 | mRNA | downstream | 102946 | 24867534 ~ 24878813 (+) | False | XLOC_015453 |
| TCONS_00030897 | other | upstream | 221873 | 24540047 ~ 24540765 (+) | False | XLOC_015445 |
| TCONS_00030898 | other | upstream | 221913 | 24540209 ~ 24540725 (+) | True | XLOC_015445 |
| TCONS_00030891 | other | upstream | 264797 | 24484289 ~ 24497841 (+) | True | XLOC_015443 |
| TCONS_00030885 | other | upstream | 411598 | 24348589 ~ 24351040 (+) | True | XLOC_015440 |
| TCONS_00030870 | other | upstream | 747695 | 24013250 ~ 24014943 (+) | True | XLOC_015433 |
| TCONS_00030908 | other | downstream | 77999 | 24842587 ~ 24845999 (+) | True | XLOC_015452 |
| TCONS_00030940 | other | downstream | 1269587 | 26034175 ~ 26039606 (+) | True | XLOC_015468 |
| TCONS_00030946 | other | downstream | 1521877 | 26286465 ~ 26287505 (+) | True | XLOC_015473 |
| TCONS_00030957 | other | downstream | 1733946 | 26498534 ~ 26501294 (+) | False | XLOC_015477 |
| TCONS_00030958 | other | downstream | 1733973 | 26498561 ~ 26501275 (+) | False | XLOC_015477 |
