RNA id: TCONS_00030904


Basic Information

Item Value
RNA id TCONS_00030904
length 1563
RNA type mRNA
GC content 0.40
exon number 5
gene id XLOC_015451
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 24770435 ~ 24778912 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACCTTGATGCTCGTGAGCGCAACGCCATTACGCATGGTCTCGTCGCCGACTCATGTTGGCTGCTCCGTCTTTCGGTTACATGAATGAAATCTCAGTTAAACATGTAAAATCTCTTGGACAATCTAAACTACCCGCTGCGGAAGAAACTACGATAAGAAGCCATTCTCGCATATCGAAACGACACCGGTTTAACGCATCTATCTGAAGTATTACGGATGCATTGGTTAAGTTACATCACTTGTCAGTATTTAGACATTTTATTAGCATATGTTATGAGATTTACTCCGGAGTAAAGGCACAGAAGTGGCGAATGAGGAGCAGAGGCGCTGCTCGAGCAAACAGCTGAGAGGATTTTGAGTGAAATCGTCGTCAACATGATATCTCGTCAGGGTAAGGAGTTTCTGGTCAGGATCGCCGGTTACTGGAAGCCGCTTTTCAGAGGCAGATTTCTGATCGTCACCAATACGGTAAGCTGCGGGGGAATGCTGGCGGCAGGAGACCTCATCCAGCAGACCCGAGAGATCCGGAGGACACCCGGCCGAACACGTGACTGGTCGCGGACAGGTTGTATGTTTGCTGTGGGATGCTCTATGGGCCCCTTCATGCACTATTGGTACCAGTGGCTCGACAAATACTTCATTGGCAATGGCATAAATAATGTCTGCAAGAAAGTGCTCGTTGATCAGCTGGTTGCGTCGCCAACGTTGGGGGCCTGGTACTTTTTGGgtaTGGGAATGATGGAGGGTCACACTTTCATTGAGGCGCAACAGGAATTTAGAGACAAATTTTGGGAGTTTTACAAGGCCGATTGGTGTGTTTGGCCAGCAGCTCAGATGATAAATTTCTACTTCCTGCCACCCAAGTTTCGTGTCCTTTATGTGAATATAGTTACTCTGGGATGGGACACTTACCTCTCCTACCTCAAACACAGAGACACAGTAGAGGTCACAAAAGAAGCTGACGGAACCGCCTGAAGATGTCTGACCAgcattaaacacacacatttaaataaatgttattctgGAGACTGTTAATCGACAGCTTACTGTCTGTAAATTTCTTATAACAGattaaatcctgtaaatattGGTAGATTGCACATTTtgctttatatttgtttttaaattatacagtgtattgaaacattttaaaacaaatgtaattgtCCAAAATCTGTGTATTTGTGACATACGCTgggcaattttaaaaaaaataaatcattctgTTTACTTTATATACACATGATTTTATAGTAGAACGTTTTTTAGTTCTTTTACTATAAATACTGATGTTTTCAGTTTGGTCAAGCATGTTTATAATCAAAATAATGCCAAAATTATTTTCCTATATATATTTGAGAAATGCTTTATGTAACATAAATGACATAGACAGTAATCTTACTGTTGATTGTTGCTATTATGATGTTCAAGAATTGCCTTTACATGCAAATTTTTTCCTAGTAATATAATTTTTTGATGATTAATGTATCTAGTGCTTTTGATTTTTGACtacttggatttgtttatttaatggaaggaaataaacattttttcGTGCGTGTGA

Function

GO:

id name namespace
GO:0061668 mitochondrial ribosome assembly biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-306 Predicted to be involved in mitochondrial ribosome assembly. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Predicted to be active in mitochondrion. Is expressed in liver. Orthologous to human MPV17L2 (MPV17 mitochondrial inner membrane protein like 2).

Ensembl:

ensembl_id ENSDART00000078854

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030903 lncRNA upstream 5847 24762638 ~ 24764588 (+) True XLOC_015450
TCONS_00033542 lncRNA upstream 49648 24716314 ~ 24720787 (+) True XLOC_015449
TCONS_00033541 lncRNA upstream 158367 24603292 ~ 24612068 (+) True XLOC_015446
TCONS_00030894 lncRNA upstream 260737 24507770 ~ 24509698 (+) False XLOC_015444
TCONS_00033540 lncRNA upstream 282281 24484273 ~ 24488154 (+) False XLOC_015443
TCONS_00033543 lncRNA downstream 124754 24903666 ~ 24906615 (+) True XLOC_015455
TCONS_00033263 lncRNA downstream 133381 24912293 ~ 24927754 (+) True XLOC_015456
TCONS_00030918 lncRNA downstream 351611 25130523 ~ 25137789 (+) True XLOC_015461
TCONS_00030924 lncRNA downstream 536746 25315658 ~ 25382341 (+) False XLOC_015463
TCONS_00030930 lncRNA downstream 1055183 25834095 ~ 25836832 (+) True XLOC_015465
TCONS_00030902 mRNA upstream 2965 24762567 ~ 24767470 (+) False XLOC_015450
TCONS_00030901 mRNA upstream 15088 24722771 ~ 24755347 (+) True XLOC_015448
TCONS_00030900 mRNA upstream 22060 24700922 ~ 24748375 (+) False XLOC_015448
TCONS_00030899 mRNA upstream 87070 24638367 ~ 24683365 (+) True XLOC_015447
TCONS_00030896 mRNA upstream 227917 24536762 ~ 24542518 (+) False XLOC_015445
TCONS_00030905 mRNA downstream 2114 24781026 ~ 24843233 (+) False XLOC_015452
TCONS_00030906 mRNA downstream 7853 24786765 ~ 24866649 (+) False XLOC_015452
TCONS_00030907 mRNA downstream 40878 24819790 ~ 24862961 (+) False XLOC_015452
TCONS_00030909 mRNA downstream 88622 24867534 ~ 24878813 (+) False XLOC_015453
TCONS_00030910 mRNA downstream 89098 24868010 ~ 24878659 (+) True XLOC_015453
TCONS_00030897 other upstream 229670 24540047 ~ 24540765 (+) False XLOC_015445
TCONS_00030898 other upstream 229710 24540209 ~ 24540725 (+) True XLOC_015445
TCONS_00030891 other upstream 272594 24484289 ~ 24497841 (+) True XLOC_015443
TCONS_00030885 other upstream 419395 24348589 ~ 24351040 (+) True XLOC_015440
TCONS_00030870 other upstream 755492 24013250 ~ 24014943 (+) True XLOC_015433
TCONS_00030908 other downstream 63675 24842587 ~ 24845999 (+) True XLOC_015452
TCONS_00030940 other downstream 1255263 26034175 ~ 26039606 (+) True XLOC_015468
TCONS_00030946 other downstream 1507553 26286465 ~ 26287505 (+) True XLOC_015473
TCONS_00030957 other downstream 1719622 26498534 ~ 26501294 (+) False XLOC_015477
TCONS_00030958 other downstream 1719649 26498561 ~ 26501275 (+) False XLOC_015477

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000004_07907663_07910335.mRNA True 734 mRNA 0.44 5 CI01000004 7907663 ~ 7910478 (+)
bowfin (Amia calva) AMCG00006075 True 1889 mRNA 0.44 5 CM030142.1 15773678 ~ 15776508 (-)