RNA id: TCONS_00033531


Basic Information

Item Value
RNA id TCONS_00033531
length 580
lncRNA type read_through
GC content 0.51
exon number 3
gene id XLOC_015418
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 23406453 ~ 23479246 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCTAGCAAAGGCACTGCAGCTTGAAGGACATCATCCTCACTACAGTCGGGAGAATAGAGGACAACACTGTGGTCGTCAACATGGACTGGACAGCCACTGGTGCTTGGTTCCTCCAATGACAGCTGGCATGACTGTGGCTCAGTGTCCCGAAGAACATGTGCACACAAGTTAGCTAGCAAAGGCACTGCAACTTGAAGGACATCATCCTCACTACAGTCGGGAGAATAGAGGACAACACTGTGGTCGTCAACATGGACTGGACAGCCACTGGTGCTTGGTTCCTCCGATGACAGTGTCCTGAAGAACACGTGCACACAAGTCAGCTAGCAAAGGCACTGCAGCTTGAAGGACATCATCCTCACTACAGTCGGACGTGGCACAGGCTGTAGGGACGTCGTCAACACTTTGAGCTGCAGAATGGTCTGGAGTTTGGAGGGTCGGTGCAGTGATGGGAGAATGGAGGACATCACTGTGGTCGTCAACATGGACTGGACAACCACTGGTGCTTGGTTCCTCCGATGACAGGTGTTCAGTCCTATCATCAATATCTCGACCTAAAAgagaaataatatgtaaaaa

Function

GO:

id name namespace
GO:0046034 ATP metabolic process biological_process
GO:0009060 aerobic respiration biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0045333 cellular respiration biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0043005 neuron projection cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0150034 distal axon cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033530 lncRNA upstream 19030 23414883 ~ 23421047 (+) True XLOC_015419
TCONS_00033529 lncRNA upstream 23722 23414883 ~ 23416355 (+) False XLOC_015419
TCONS_00033526 lncRNA upstream 29229 23406453 ~ 23410848 (+) False XLOC_015418
TCONS_00033524 lncRNA upstream 255273 23156012 ~ 23184804 (+) False XLOC_015414
TCONS_00033525 lncRNA upstream 255273 23156014 ~ 23184804 (+) False XLOC_015414
TCONS_00033262 lncRNA downstream 62481 23541727 ~ 23545091 (+) False XLOC_015422
TCONS_00033533 lncRNA downstream 62481 23541727 ~ 23609276 (+) False XLOC_015422
TCONS_00033534 lncRNA downstream 65027 23544273 ~ 23609276 (+) False XLOC_015422
TCONS_00033535 lncRNA downstream 70940 23550186 ~ 23557515 (+) True XLOC_015423
TCONS_00033536 lncRNA downstream 96755 23576001 ~ 23609276 (+) True XLOC_015422
TCONS_00030857 mRNA upstream 78144 23351454 ~ 23361933 (+) False XLOC_015417
TCONS_00030859 mRNA upstream 79068 23352302 ~ 23361009 (+) True XLOC_015417
TCONS_00030858 mRNA upstream 84372 23351533 ~ 23355705 (+) False XLOC_015417
TCONS_00030854 mRNA upstream 146576 23222939 ~ 23293501 (+) False XLOC_015415
TCONS_00030852 mRNA upstream 307943 23130389 ~ 23132134 (+) True XLOC_015413
TCONS_00030860 mRNA downstream 3552 23482798 ~ 23484348 (+) True XLOC_015421
TCONS_00030861 mRNA downstream 133794 23613040 ~ 23620219 (+) False XLOC_015424
TCONS_00030863 mRNA downstream 197933 23677179 ~ 23713760 (+) False XLOC_015425
TCONS_00030865 mRNA downstream 222367 23701613 ~ 23726605 (+) True XLOC_015425
TCONS_00030866 mRNA downstream 251948 23731194 ~ 23745290 (+) True XLOC_015427
TCONS_00030856 other upstream 165296 23274332 ~ 23274781 (+) True XLOC_015415
TCONS_00030855 other upstream 182180 23257777 ~ 23257897 (+) True XLOC_015416
TCONS_00030841 other upstream 448556 22986282 ~ 22991521 (+) True XLOC_015408
TCONS_00030832 other upstream 773377 22660071 ~ 22666700 (+) True XLOC_015401
TCONS_00030805 other upstream 2064483 21375467 ~ 21375594 (+) True XLOC_015384
TCONS_00030864 other downstream 200627 23679873 ~ 23679989 (+) True XLOC_015426
TCONS_00030870 other downstream 534004 24013250 ~ 24014943 (+) True XLOC_015433
TCONS_00030885 other downstream 869343 24348589 ~ 24351040 (+) True XLOC_015440
TCONS_00030891 other downstream 1005043 24484289 ~ 24497841 (+) True XLOC_015443
TCONS_00030897 other downstream 1060801 24540047 ~ 24540765 (+) False XLOC_015445

Expression Profile

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