RNA id: TCONS_00030917


Basic Information

Item Value
RNA id TCONS_00030917
length 4040
RNA type mRNA
GC content 0.44
exon number 2
gene id XLOC_015460
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 25124498 ~ 25129409 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGCATCACCGGAGTTCGCGCTTAATTCCAGCCGCTCTTTTACTCTTGTTTGGTATTGTTCCTTTCAGGATGCAAAAGTTAACGGAGGAATAATAAGCAACGAAGCTGGCTCTTAGCACAGACAAAGTAATATGAATATTTGAAAGCGTAGTTAATTATGCTGAATGCTTTATAAACATTTCACTAAAACAGAAGACAGTTGCGCTCGCTGGGGAGAGAGAGAATCGCTTTTATTCAACAACACGAAGAAAAGTGCACACAATAATAGCAAGCTAGCGAAGTAGCAGGCAAGCGGATTGTGGGGTTCGTTCAAAACAGCTTTCAGAAACAACCTCAGTCGAGTATTTCAAGGATTATACTTCGTGTGCATGGGACTCGGTTTCTGTTTTGACACTGTTGTTTTGGACTGATTTTACGCTGAGGCTTGTTTCACCGAAAATGCGGCTCGAGGCCTGCTGTGCTGCTCGCTGAAATGCTGTTTATCACCAAGTCCTTCGTTTCTGTGTGTTTTGTCACAGAAGTGTATCGCTCTTTACATTGAGAAAACTGGATCTGACTCTCATGGAAGACAAATAGTCCCCCTCGTCGTCTTGAGCAGCTAATTTTCCTCCCGGACTGACCATCTCTGCAAGATCTACTCAACATCCAGGAAATATCTGACATGTTAACAAGCAGACGACTCAAAGCCGCTCATCTGCTTGCGAGTCATGTCAAATTACACCCTCTGTTTGAAGCGTTGGGTCAAGCCTGGTTGATTGTGTCCTCACAGCTCCTATTTACTGGGGGTCTGACCGAGAGTCGCTCTCAGTAGCTGATCAGTCCTCTCCTTTTGTCCTGCATTGACTGAAGCCGCTAAGATGAACCCGGTAAACGCCACCGCGCTGTACGTGTCGGCCTGTCGCTCTCTTGTGCAGTGCGACCCGAAGGACCCGGAGACGTGCGGAGCGCTGTTTAACGTCCTTCCTTTCTTTAGGGACTCTCTGTCCTGCTTAGTCTGTGGGAATTTGCTTCAGGATCCACTTGCTCCCAAAAATTCCTCCTGCCAGCACTATGTATGCAAGGGTTGTAAAGGCAAGAAAATGTCATTGAAGCCATCCTGCAGCTGGTGTAAAGACTATGAGCAGTTTGAGGAGAACAGACAGCTCCAGATTCTGATCGACTGCTACAGGAATCTCTGCGAATGTGTCTCAGTCTGGGTCACTACAGAGCAGAGCGTCTTGGAAGTCAAAGGGTACCCTGAGGTGAAGAAGATGCTGGAGGAGGTGCTGGGGGTGGATCTGGAACAAGAAGAACTCAGTCCTGTTAAAGACACTTTGGAGGATCCCCAACTGAAAACTGACCCAGAGTCCTCACAAAACTCTGCTGATGTCAATCTGACTGACTCAGACAAACCCTCTGATCAGACCTCATCTGATCCAGAGTCCCCTAAACCTATCTGTGCTGATGAACCTTTGAGCTCCAGCTCAGAACTTCACATGAGTAGTGTCAGCGCTGACATTGTGAAGTGCAGCATTAGTCCAGAGAACAGCCCTGAATCTGTGCACCTCAGTGAGGAGAGCACAGATGTCCTGGAGGACCTCAAATTTGACATTGCAAACAAGGAGGTGTCATATGAACAGTCTAAATCAACAGCAGAGCTGTGTCAGCATTCATTGCAATCCCAAACTAGTGGGGCCTTTGCACCAGGACACCCACCGCAACCTCAGACAGGCTTGACGTGTCTTGCCGCAGCCCACAGAAAAGTGCGCCTGAGCCGAAAGCGCTCTCGCTCTGAAAGCGACAGCGAGATGCTTCAACCTCTGCCCATCACCAGCCTCATCCAAGGGCCATCGGTAGCAGCCACAGCTCCTCCGAAAACAGCATTTGAACCCAAAGCGCCCTCACCACCACCGGTCATGGTCACCAATGGAGGTATTTTAAAGGTCAACAAGACCGTCCTGGATTCAACAAAAAATATCCAGATAAACTCAGACATGATTAATAAGAAAGTTCAGGCGAAGTCTAAAGTGAGCGTTCCGAAAGCAAAGAACAAATCGAAGGAAAGGGTGCTCTCGCCTAGCCTGTTACCGGGACAGCCTCCTAAAGTTGTATACAAAAAGACACAAGAGAAAAAAGGCTGCAAGTGTGGACGAGCCACTCAGAATCCAAGTGTTCTTACCTGCAGGGGTCAGCGGTGTCCCTGCTACTCCAACCGTAAGGCCTGCTTGGACTGCATCTGCAGGGGCTGCCAGAACTCGTACATGGCCAATGGGGAGAAGAAGCTGGAGGCTTTTGCCGTCCCCGAAAAAGCCCTGGAACAGACCAGGCTCACTCTCGGCATCAACCTCACCAGTATTTCGGTCAGAAACACTGGCACGAATGCTGCAGGAGTTCTCAGCCTTTCCGCAGGCTCCCCGATGGCCTCTTTTCTGGCATCCAGCGCAGACGAGGACCAGAGTTTTGAAGATGCTCTCAAGATGCATTTTGACTGTTGATGGCTGTCCTGCTACTGATCTCCCCATCAGCCGTGGTTGATTCACAGTTATGTTGAGCAGAATGTTTGCCAAAACTCTTGACTGTAGTTTTCATGTTGAACTTACACCATCACAAATGTACACACTGCTGTAATGGAAAGTTACTGTGAAGCTGAAATTCTAAAAAAGTGGAATTCTGTgcgttttgtttgttatttttggaAGAAACTGTATGCTTCTATACAATTCATAATGAACTAATGATCTGATAAGCATCTGATATTTCTCTTTAAAGTGTTCAATGACCCAAACCTAAAAAATGAGTTTCACAGGTATTTGTGTGATCACTATATGGCTAACAAGATTGACTCATAAACCcaaatgttaattaatttaatttgtttacatttctgtggtgacaatatttaaaaaatgtttatgaatATATTGCTTCTAAGCATTTGTGGAAGGTAAAATTCACAGCGATCTGTATTGTCAGTGTCAGGTGAAATCACAATTTACTTATGGTGGAAAATGTAGCACTTAGTCCCAATAGTGTTAATGGGTTTAGAGGCCTATAATGATCATATAGGACTGAGGTGTCCTGTCAggatagttttattttttgttcaatacTTTGTTCGGTAATTTCTGAATGGAAAATAGTGctgtgtgcatttttatttgtcatgttCGAGCTTTGAAAGACGTTTGTCATTGGTTTTGTAAAGATGACGAAGCACAAATGCCACCACAGCTATGTTTCTCCAACATTTGAGAGTTGCGTACACATTTTTATTCTCCctgttgttcattattagttcagaCTGAGCTGGCCGTCTCGCCAGCACAATATCTACTACAGATTTCTGAAACAAGTGAATGTAAGAGTGTTCAGTGTGTTGCCTGAGAATGTATTCATGGCAGTGaaattttttaaagcaatatgAGAATCAATATGGTAGGTCGATAACCATCTTTTAACCCTTCCCCCTCCCACAACAGCATCATATTTGTTTTGATGCAAATTGTAAACGAGTATTTCAAGATGTTATGTTCTTTAAATGTTTGCCCGAGCACCTTTTAGCACCCACTGAGGCCTCTTGACTCTAATTAGTTGTGTTTGTCTTGCAGTTGTGTTGTGATTCCTGTTCTAGGGACCAAAACTAGAAACCTGTTGAGAGGTCAGTGAACACGTCTATACTGTTACACTGCGCCGTTTCATGTCTTATATAATGAAGAAGGGTTGGCAGTGCTTCATCTGTATCCTTAAATATgcttgaaaacactatcagtagGGCTTTGACCAAATATTAAAAACCTTTTTAGCTGAGTCTTGGATCTTAGTGGGATATTGTGTTGTATTTTCAAACTTTATAGTTTGGtagcgttgttgtttttttcccctccctTTGCTTTTCAATGGTCATTACTTGAACTGAGATTTTAGTttcttgatttattatttttcttttgaattaCTGGAGAACCTCTTATTGCTGGTTTATTCACTGCCACATTGAAATAATGAGAACTGCAGAAagctacaaaaataaattatagttttttatttcttgtttttcaAAA

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0043984 histone H4-K16 acetylation biological_process
GO:0072487 MSL complex cellular_component
GO:0046872 metal ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-449 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in histone H4-K16 acetylation and protein ubiquitination. Predicted to be part of MSL complex. Orthologous to human MSL2 (MSL complex subunit 2).

Ensembl:

ensembl_id ENSDART00000056801

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033263 lncRNA upstream 196744 24912293 ~ 24927754 (+) True XLOC_015456
TCONS_00033543 lncRNA upstream 217883 24903666 ~ 24906615 (+) True XLOC_015455
TCONS_00030903 lncRNA upstream 359910 24762638 ~ 24764588 (+) True XLOC_015450
TCONS_00033542 lncRNA upstream 403711 24716314 ~ 24720787 (+) True XLOC_015449
TCONS_00033541 lncRNA upstream 512430 24603292 ~ 24612068 (+) True XLOC_015446
TCONS_00030918 lncRNA downstream 1114 25130523 ~ 25137789 (+) True XLOC_015461
TCONS_00030924 lncRNA downstream 186249 25315658 ~ 25382341 (+) False XLOC_015463
TCONS_00030930 lncRNA downstream 704686 25834095 ~ 25836832 (+) True XLOC_015465
TCONS_00033544 lncRNA downstream 1037169 26166578 ~ 26167419 (+) True XLOC_015470
TCONS_00030948 lncRNA downstream 1159893 26289302 ~ 26290690 (+) True XLOC_015474
TCONS_00030914 mRNA upstream 15911 25019387 ~ 25108587 (+) False XLOC_015459
TCONS_00030916 mRNA upstream 19015 25074849 ~ 25105483 (+) True XLOC_015459
TCONS_00030915 mRNA upstream 19533 25074849 ~ 25104965 (+) False XLOC_015459
TCONS_00030913 mRNA upstream 179679 24936766 ~ 24944819 (+) True XLOC_015458
TCONS_00030912 mRNA upstream 191745 24931677 ~ 24932753 (+) True XLOC_015457
TCONS_00030919 mRNA downstream 69239 25198648 ~ 25289828 (+) False XLOC_015462
TCONS_00030920 mRNA downstream 115674 25245083 ~ 25289828 (+) False XLOC_015462
TCONS_00030921 mRNA downstream 115744 25245153 ~ 25291181 (+) False XLOC_015462
TCONS_00030922 mRNA downstream 148698 25278107 ~ 25291181 (+) True XLOC_015462
TCONS_00030923 mRNA downstream 186182 25315591 ~ 25544850 (+) False XLOC_015463
TCONS_00030908 other upstream 278499 24842587 ~ 24845999 (+) True XLOC_015452
TCONS_00030897 other upstream 583733 24540047 ~ 24540765 (+) False XLOC_015445
TCONS_00030898 other upstream 583773 24540209 ~ 24540725 (+) True XLOC_015445
TCONS_00030891 other upstream 626657 24484289 ~ 24497841 (+) True XLOC_015443
TCONS_00030885 other upstream 773458 24348589 ~ 24351040 (+) True XLOC_015440
TCONS_00030940 other downstream 904766 26034175 ~ 26039606 (+) True XLOC_015468
TCONS_00030946 other downstream 1157056 26286465 ~ 26287505 (+) True XLOC_015473
TCONS_00030957 other downstream 1369125 26498534 ~ 26501294 (+) False XLOC_015477
TCONS_00030958 other downstream 1369152 26498561 ~ 26501275 (+) False XLOC_015477
TCONS_00030959 other downstream 1369153 26498562 ~ 26501305 (+) False XLOC_015477

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000004_08108419_08111331.mRNA True 2618 mRNA 0.49 2 CI01000004 8107726 ~ 8111666 (+)