RNA id: CI01000004_08108419_08111331.mRNA


Basic Information

Item Value
RNA id CI01000004_08108419_08111331.mRNA
length 2618
RNA type mRNA
GC content 0.49
exon number 2
gene id CI01000004_08108419_08111331
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 8107726 ~ 8111666 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTATATAAACATATCGCTCAAACGGGAGTATATCGCACTCGTTAATGAGAGAAAAGCTCTTATATTCAGCAACACGAAGAAAAGTGCAGACAATATTAGCTAGCTAGCGAACTAGCAACCAAGCGAACTGTGTGGTCTGTTCAGCTGAACTGTAAATAAACCCTGTGGTTGTGAAAATTTCAAGGATTATACTTTTTGTGCGACGGATTGTTTCTTTCTGTTTTTCCATTTGTTATTTGTGGACGGATTATACACAGAGCTCGTGCCGCCGACAGTACGCCTCGGGCCTGTTGTGCTTCTCTCTAAAATGCTGTTTATCCCCCAGTCCTTCATCTCTGTGTCCTTTATCACAAAAGTGCACCGCTCTTCGTGTTGAAGTAATCGGGACCGGGACCCGCCACTCATGGAAGGCAGACTATAGTCCGTGCTATACATCGCTTACAGCAGCTTATTTTCACCAAGCTGACCGTCTCTGGAAGATCTTCTAAACACTGACATGTTAACAAGCAGACGACTCAAAGCCGCTCATCTGCTTGCGAGTCATGTCAAATTACACTCTTTGTTTGAGGCGTTGGGTCAAGCCTGGTTAATTGTGTTCTCACAGTTATTCTGCGTTGGGAGTGTGATCAACAATCTCTCCCAGTAGCTGATCAGCCCGCTTCTCTTGTCCTGCTATTGACTGAAGTCGCTGAGATGAACCCGGTAAACGCCACCGCGCTGTACGTGTCGGCGTGTCGCTCTCTTCTGAAGTGCGACCCGAAGGACCCGGAGACGTACGGAGGGCTGTTTAACGTCCTGCCTTTCTTTAGAGACTCCCTATCCTGCCTGGTGTGTGGAAATCTGCTTCAGGAGCCACTTGCTCCAAAAAATTCCTCCTGCCAGCACTGTGTTTGCAAGGGTTGTAAAGGCAAGAAAATGTTATTGAAGCCATCCTGCAGCTGGTGTAAAGACTATGAGCAATTTGAGGAGAATAATCAGCTCCAGATTCTGATCGACTGCTACAGGAGTCTTTGCGAGTGTGTCTCAATGTGCGTCATGACAGAGCAGAGTGCCTTGGGGGTTAAAGGTTACCCTGAGGTCAAGAAGATGCTGGAAGAGGTGTTGGGGGTGAATCAGGAACAAGAAGAGGTCAGTTCTTTCAAAGACACTTTAGATGTTCCTCATCTCAAAACAGAGACCGACTCCTCAGAAAACTCTGCTGACATCAAGCCGAGTGACCTGGAAAACCCCTCTGAGCAGATCCCAGAAGAACTAGAGACCCCCAAGCCTGTCAGTGCCGACGAACCTCTGAGATCTAACTCAGAACTACGCATGGATACTGTCACTGTTAACGATGCAATGTGCAAAGTTAGCACCGAATCCATGCACTTTAGTGCAGAGAATGCAGGTATCTTAGAGGACCTAAAATCTGAAATTACGAACACGGAGGTTTCATGTGAACAGACTAAATCAACACCAGAGCTGTGTCAGCACTCATTACAGTCCCAAACCAGCGGACACCCGCCAAAGCCTCAGACGGGCCTGACGTGCCTCGCCGCAGCCCACAGAAAAGCGCGCCTGAGCCGAAAGCGCTCTCGCTCTGAGAGTGACAGCGAGATGCTCCAGCCTCTGCCCATCACCAGCCTCATCCAGGGGCCATCGGTAGCGGCCACAGCTCCACCGAAAACAGCATTTGAACCGAAAGCACCCTCACCGCCTGCTGTCGTGGTCACTAACGGAGGTGTTTTGAAGGTCAACAGGGCCGTGCTGGATTCAACTAAAAATATCCAGATAAACACAGACCTTGCTAATAAGAAAGTTCAGGCCAAGTCTAAAGTGGCCATCCCGAAGGCGAAAGGCAAGGCAAAGGACAGGCTGCTCTCGGCTAGCGTGTTACCAGGCCAGCCTCCTAAAGTCGTATACAAAAAGACGCAAGAGAAAAAAGGCTGCAAGTGTGGGCGAGCCACCCAGAATCCAAGTGTTCTTACCTGCAGGGGTCAAAGGTGCCCCTGCTACTCCAACCGTAAGGCCTGTTTGGACTGCATCTGCAGGGGCTGCCAGAACTCGTACATGGCCAACGGCGAGAAGAAGCTGGAGGCTTTCGCGGTGCCTGAAAAAGCCCTGGAGCAGACCAGGCTCACTCTCGGCATCAACCTCACCAGTATTTCGGTCAGAAACGCTGGCACGAACCCTGCCGGGGTCCTCAGCCTGTCCGCCGGCTCGCCTATGGCCTCTTTCCTCTCGTCCAGCGCCGACGAGGACCAGAGTTTTGAAGATGCTCTCGAGATGCATTTTGACTGTTGATAGCTGTCCTGCTACTGACATCTCTCTTAGCCGTGGACGATTCGAACAGAAATTGTTTGCCAAAACTCTTGTCTGTAGTTTTTCATGTTCAACCTCTACCGTCAAACACACGCACACACTGCTGTAATAGAAAGTTACTGTGAAGCTGAGCGTTATGGCATATTTTGTTTTTATTTTGAAGGAACTGTATGCTTCTGCATGACTGTTATAGTCACAATGAACTAAGGATTTGATAAACATCTGTTATTTTTCTTTAAATGTTCAATGACCCAAACCTTAAAATGAATTTCATCGGTATTTGTGATACATTTGTCTGCTAACACGTATGGCACATT

Function

GO:

id name namespace
GO:0072487 MSL complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32563 lncRNA upstream 74014 8028250 ~ 8033712 (+) False G28801
TU32564 lncRNA upstream 75656 8028250 ~ 8032070 (+) True G28801
TU32562 lncRNA upstream 81828 8025491 ~ 8025898 (+) True G28800
TU32559 lncRNA upstream 123949 7983481 ~ 7983777 (+) True G28797
TU32553 lncRNA upstream 280044 7827368 ~ 7827682 (+) True G28791
TU32591 lncRNA downstream 165536 8277202 ~ 8284097 (+) True G28819
TU32606 lncRNA downstream 254029 8365695 ~ 8365921 (+) True G28834
TU32607 lncRNA downstream 257195 8368861 ~ 8369073 (+) True G28835
TU32618 lncRNA downstream 299060 8410726 ~ 8411220 (+) False G28843
TU32616 lncRNA downstream 299146 8410812 ~ 8411220 (+) True G28843
CI01000004_08081989_08097935.mRNA mRNA upstream 8972 8081704 ~ 8098754 (+) True CI01000004_08081989_08097935
CI01000004_08015521_08017006.mRNA mRNA upstream 90712 8015297 ~ 8017014 (+) True CI01000004_08015521_08017006
CI01000004_07993172_07997413.mRNA mRNA upstream 110313 7993172 ~ 7997413 (+) True CI01000004_07993172_07997413
CI01000004_07987968_07989044.mRNA mRNA upstream 118197 7985367 ~ 7989529 (+) True CI01000004_07987968_07989044
CI01000004_07971396_07974484.mRNA mRNA upstream 133223 7971324 ~ 7974503 (+) True CI01000004_07971396_07974484
CI01000004_08177656_08183324.mRNA mRNA downstream 65899 8177565 ~ 8183595 (+) True CI01000004_08177656_08183324
CI01000004_08200962_08208539.mRNA mRNA downstream 87705 8199371 ~ 8210704 (+) True CI01000004_08200962_08208539
CI01000004_08243282_08245264.mRNA mRNA downstream 131313 8242979 ~ 8245369 (+) True CI01000004_08243282_08245264
CI01000004_08252556_08257067.mRNA mRNA downstream 140728 8252394 ~ 8258093 (+) True CI01000004_08252556_08257067
CI01000004_08302613_08354790.mRNA mRNA downstream 190947 8302613 ~ 8354795 (+) True CI01000004_08302613_08354790
TU32454 other upstream 451343 7654772 ~ 7654879 (+) True G28706
TU32079 other upstream 1533305 6572819 ~ 6574421 (+) True G28354
TU32005 other upstream 1605639 6470028 ~ 6502087 (+) True G28302
TU31830 other upstream 2374725 5732589 ~ 5733001 (+) True G28165
TU31418 other upstream 2733923 5372825 ~ 5373803 (+) True G27805
TU32590 other downstream 322039 8439958 ~ 8451227 (+) True G28818
TU32637 other downstream 487569 8599235 ~ 8599603 (+) True G28859
TU32792 other downstream 864772 8976438 ~ 8980984 (+) False CI01000004_08976512_08980033
TU32793 other downstream 864772 8976438 ~ 8980984 (+) True CI01000004_08976512_08980033
TU34813 other downstream 2385710 10497376 ~ 10497788 (+) True G30797

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00030917 True 4040 mRNA 0.44 2 NC_007113.7 25124498 ~ 25129409 (+)
eurasian perch (Perca fluviatilis) TU301970 False 3084 TUCP 0.53 4 NC_053133.1 24963445 ~ 24967990 (-)