CI01000004_08108419_08111331 (MSL2A)


Basic Information

Item Value
gene id CI01000004_08108419_08111331
gene name MSL2A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 8107726 ~ 8111666 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_08108419_08111331.mRNA
CTATATAAACATATCGCTCAAACGGGAGTATATCGCACTCGTTAATGAGAGAAAAGCTCTTATATTCAGCAACACGAAGAAAAGTGCAGACAATATTAGCTAGCTAGCGAACTAGCAACCAAGCGAACTGTGTGGTCTGTTCAGCTGAACTGTAAATAAACCCTGTGGTTGTGAAAATTTCAAGGATTATACTTTTTGTGCGACGGATTGTTTCTTTCTGTTTTTCCATTTGTTATTTGTGGACGGATTATACACAGAGCTCGTGCCGCCGACAGTACGCCTCGGGCCTGTTGTGCTTCTCTCTAAAATGCTGTTTATCCCCCAGTCCTTCATCTCTGTGTCCTTTATCACAAAAGTGCACCGCTCTTCGTGTTGAAGTAATCGGGACCGGGACCCGCCACTCATGGAAGGCAGACTATAGTCCGTGCTATACATCGCTTACAGCAGCTTATTTTCACCAAGCTGACCGTCTCTGGAAGATCTTCTAAACACTGACATGTTAACAAGCAGACGACTCAAAGCCGCTCATCTGCTTGCGAGTCATGTCAAATTACACTCTTTGTTTGAGGCGTTGGGTCAAGCCTGGTTAATTGTGTTCTCACAGTTATTCTGCGTTGGGAGTGTGATCAACAATCTCTCCCAGTAGCTGATCAGCCCGCTTCTCTTGTCCTGCTATTGACTGAAGTCGCTGAGATGAACCCGGTAAACGCCACCGCGCTGTACGTGTCGGCGTGTCGCTCTCTTCTGAAGTGCGACCCGAAGGACCCGGAGACGTACGGAGGGCTGTTTAACGTCCTGCCTTTCTTTAGAGACTCCCTATCCTGCCTGGTGTGTGGAAATCTGCTTCAGGAGCCACTTGCTCCAAAAAATTCCTCCTGCCAGCACTGTGTTTGCAAGGGTTGTAAAGGCAAGAAAATGTTATTGAAGCCATCCTGCAGCTGGTGTAAAGACTATGAGCAATTTGAGGAGAATAATCAGCTCCAGATTCTGATCGACTGCTACAGGAGTCTTTGCGAGTGTGTCTCAATGTGCGTCATGACAGAGCAGAGTGCCTTGGGGGTTAAAGGTTACCCTGAGGTCAAGAAGATGCTGGAAGAGGTGTTGGGGGTGAATCAGGAACAAGAAGAGGTCAGTTCTTTCAAAGACACTTTAGATGTTCCTCATCTCAAAACAGAGACCGACTCCTCAGAAAACTCTGCTGACATCAAGCCGAGTGACCTGGAAAACCCCTCTGAGCAGATCCCAGAAGAACTAGAGACCCCCAAGCCTGTCAGTGCCGACGAACCTCTGAGATCTAACTCAGAACTACGCATGGATACTGTCACTGTTAACGATGCAATGTGCAAAGTTAGCACCGAATCCATGCACTTTAGTGCAGAGAATGCAGGTATCTTAGAGGACCTAAAATCTGAAATTACGAACACGGAGGTTTCATGTGAACAGACTAAATCAACACCAGAGCTGTGTCAGCACTCATTACAGTCCCAAACCAGCGGACACCCGCCAAAGCCTCAGACGGGCCTGACGTGCCTCGCCGCAGCCCACAGAAAAGCGCGCCTGAGCCGAAAGCGCTCTCGCTCTGAGAGTGACAGCGAGATGCTCCAGCCTCTGCCCATCACCAGCCTCATCCAGGGGCCATCGGTAGCGGCCACAGCTCCACCGAAAACAGCATTTGAACCGAAAGCACCCTCACCGCCTGCTGTCGTGGTCACTAACGGAGGTGTTTTGAAGGTCAACAGGGCCGTGCTGGATTCAACTAAAAATATCCAGATAAACACAGACCTTGCTAATAAGAAAGTTCAGGCCAAGTCTAAAGTGGCCATCCCGAAGGCGAAAGGCAAGGCAAAGGACAGGCTGCTCTCGGCTAGCGTGTTACCAGGCCAGCCTCCTAAAGTCGTATACAAAAAGACGCAAGAGAAAAAAGGCTGCAAGTGTGGGCGAGCCACCCAGAATCCAAGTGTTCTTACCTGCAGGGGTCAAAGGTGCCCCTGCTACTCCAACCGTAAGGCCTGTTTGGACTGCATCTGCAGGGGCTGCCAGAACTCGTACATGGCCAACGGCGAGAAGAAGCTGGAGGCTTTCGCGGTGCCTGAAAAAGCCCTGGAGCAGACCAGGCTCACTCTCGGCATCAACCTCACCAGTATTTCGGTCAGAAACGCTGGCACGAACCCTGCCGGGGTCCTCAGCCTGTCCGCCGGCTCGCCTATGGCCTCTTTCCTCTCGTCCAGCGCCGACGAGGACCAGAGTTTTGAAGATGCTCTCGAGATGCATTTTGACTGTTGATAGCTGTCCTGCTACTGACATCTCTCTTAGCCGTGGACGATTCGAACAGAAATTGTTTGCCAAAACTCTTGTCTGTAGTTTTTCATGTTCAACCTCTACCGTCAAACACACGCACACACTGCTGTAATAGAAAGTTACTGTGAAGCTGAGCGTTATGGCATATTTTGTTTTTATTTTGAAGGAACTGTATGCTTCTGCATGACTGTTATAGTCACAATGAACTAAGGATTTGATAAACATCTGTTATTTTTCTTTAAATGTTCAATGACCCAAACCTTAAAATGAATTTCATCGGTATTTGTGATACATTTGTCTGCTAACACGTATGGCACATT

Function

symbol description
msl2a Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in histone H4-K16 acetylation and protein ubiquitination. Predicted to be part of MSL complex. Orthologous to human MSL2 (MSL complex subunit 2).

GO:

id name namespace
GO:0072487 MSL complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_08108419_08111331.mRNA True 2618 mRNA 0.49 2 8107726 8111666

Neighbor

gene id symbol gene type direction distance location
CI01000004_08081989_08097935 STAG1, STAG1A, STAG1B coding upstream 8972 8081704 ~ 8098754 (+)
CI01000004_08015521_08017006 NA coding upstream 90712 8015297 ~ 8017014 (+)
CI01000004_07993172_07997413 GYG1A coding upstream 110313 7993172 ~ 7997413 (+)
CI01000004_07987968_07989044 AGTR1A coding upstream 118197 7985367 ~ 7989529 (+)
CI01000004_07971396_07974484 NA coding upstream 133223 7971324 ~ 7974503 (+)
CI01000004_08177656_08183324 PPP2R3A coding downstream 65899 8177565 ~ 8183595 (+)
CI01000004_08200962_08208539 PPP2R3A coding downstream 87705 8199371 ~ 8210704 (+)
CI01000004_08243282_08245264 NA coding downstream 131313 8242979 ~ 8245369 (+)
CI01000004_08252556_08257067 NA coding downstream 140728 8252394 ~ 8258093 (+)
CI01000004_08302613_08354790 FNDC3BA coding downstream 190947 8302613 ~ 8354795 (+)
G28801 NA non-coding upstream 74014 8028250 ~ 8033712 (+)
G28800 NA non-coding upstream 81828 8025491 ~ 8025898 (+)
G28797 NA non-coding upstream 123949 7983481 ~ 7983777 (+)
G28791 NA non-coding upstream 280044 7827368 ~ 7827682 (+)
G28790 NA non-coding upstream 285709 7821817 ~ 7822017 (+)
G28819 NA non-coding downstream 165536 8277202 ~ 8284097 (+)
G28834 NA non-coding downstream 254029 8365695 ~ 8365921 (+)
G28835 NA non-coding downstream 257195 8368861 ~ 8369073 (+)
G28843 NA non-coding downstream 299060 8410726 ~ 8411220 (+)
G28848 NA non-coding downstream 359079 8470745 ~ 8471884 (+)
CI01000004_07654234_07655677 MRPL34 other upstream 451343 7654234 ~ 7656383 (+)
CI01000004_06571261_06572539 SEP15 other upstream 1533305 6570771 ~ 6572667 (+)
G28302 NA other upstream 1605639 6470028 ~ 6502087 (+)
G28165 NA other upstream 2374725 5732589 ~ 5733001 (+)
G27805 NA other upstream 2733923 5372825 ~ 5373803 (+)
CI01000004_08414451_08436256 NA other downstream 322039 8414316 ~ 8439933 (+)
G28859 NA other downstream 487569 8599235 ~ 8599603 (+)
CI01000004_08976512_08980033 TTPA other downstream 864772 8976254 ~ 8980984 (+)
G30797 NA other downstream 2385710 10497376 ~ 10497788 (+)
G31710 NA other downstream 3525585 11637251 ~ 11642400 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015460 msl2a coding NC_007113.7 CM002886.2 25124498 ~ 25129409 (+)