CI01000004_07971396_07974484


Basic Information

Item Value
gene id CI01000004_07971396_07974484
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 7971324 ~ 7974503 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_07971396_07974484.mRNA
GTATAAATTACCTTCTTTCCGAGCCTCGTCACATAATCTAAACATTTTGTTGAGATCCACACAGATTCATGGATGAACGTTGCAGAGAACTTAGCCTACAAGTGGAGGCCTACAGAAAGCTGTTACAACAAACGCTCTGTATTATATTACAACTTGTACAATATGGCTGCATTCGGCTCTTGTTTTCAGATGTTTATGGATAATACCGCTGATGTCTATAGCATTTGTGATGGACAGATGATGATGTCATCCACCGTGGATCTTCTGCAGTGTAACAGGAGTTTTTTTGAAGTTTCTCGGGAACAACACGATTCTTTAATCTGTATGGACGGGTATACACACGTGACTCCAACAGAAGAACTTTACAACACACAGGATGAACAGATACAAGGAGAAAGAATTATGTTCAACGGCTCAAACACAGATAGACCCATTTATCTGCAGTCCAGAGAGATCAGTCTGAACACGAGCATGTCAAGGTTCACCTGCCAGTGGCTGGAGCGACAGTGCTGTAAGAAAACCTACTGCACAATGAATGAGCTCATCTCTCATCTGACAGCGGAGCATGTTAATGTGTCAGGACAATCCAGTTACATTTGTTTATGGGAAGATTGTTCCCGTCAAAGGAATCCATTCAAGGCTAAGTACAAACTGATCAATCACCTAAGAGTCCACACAGGTGAAAAACCCTTCCAGTGCTCCTACGGATGTGGAAGAGAGTTTGCACGGGCCGAAAACCTGAAAATTCATGAAAGGACACATACAGGTGAAAAACCTTTCAGATGCCCTTTTGAGGCCTGTGAAAGGCGTTTTGCAAACAGCAGCGATAAACAAAAGCACATACGTGTCCACGCACCTGACAAACAATACATTTGCATGTACTGCAATAAATCATACTCTCATGCCAGCTCCCTCAGAAAACACACAAAGTGTAATAAAACATTAAAACTGCACAAATTCAGTTTCATTCAGAACAATTTTGATTATAGGCGCAAAACTAAGAGCATTGTAAATGACACAACTAGCGAAAGATGCTCTAATAATGTTCATATGCCATTTGCATACTTCATTGATTGGTGTTTTTCCCTTGAGTGTTTCCTGATTAATATAGCTCTTAAAATCAGACTCTACATCATCAGTGCAGATGTTAATGTGTTCACTATATGGTTACTGTAAACAAAAGTTTGTTACAGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_07971396_07974484.mRNA True 1195 mRNA 0.40 4 7971324 7974503

Neighbor

gene id symbol gene type direction distance location
CI01000004_07962260_07967751 RAB3A.L, RAB3A, RAB3AA, RAB3AB coding upstream 2717 7962260 ~ 7968607 (+)
CI01000004_07954612_07959231 PDE4C, PDE4CA coding upstream 11598 7954236 ~ 7959726 (+)
CI01000004_07945349_07952716 NA coding upstream 18608 7945056 ~ 7952716 (+)
CI01000004_07911608_07916117 NA coding upstream 55169 7911608 ~ 7916155 (+)
CI01000004_07907663_07910335 MPV17L2 coding upstream 60846 7907663 ~ 7910478 (+)
CI01000004_07987968_07989044 AGTR1A coding downstream 10864 7985367 ~ 7989529 (+)
CI01000004_07993172_07997413 GYG1A coding downstream 18669 7993172 ~ 7997413 (+)
CI01000004_08015521_08017006 NA coding downstream 40794 8015297 ~ 8017014 (+)
CI01000004_08081989_08097935 STAG1, STAG1A, STAG1B coding downstream 107201 8081704 ~ 8098754 (+)
CI01000004_08108419_08111331 MSL2A coding downstream 133223 8107726 ~ 8111666 (+)
G28791 NA non-coding upstream 143642 7827368 ~ 7827682 (+)
G28790 NA non-coding upstream 149307 7821817 ~ 7822017 (+)
G28784 NA non-coding upstream 166671 7804266 ~ 7804653 (+)
G28780 NA non-coding upstream 204935 7765563 ~ 7766389 (+)
G28779 NA non-coding upstream 206613 7764512 ~ 7764711 (+)
G28797 NA non-coding downstream 8978 7983481 ~ 7983777 (+)
G28800 NA non-coding downstream 50988 8025491 ~ 8025898 (+)
G28801 NA non-coding downstream 53747 8028250 ~ 8033712 (+)
G28819 NA non-coding downstream 302699 8277202 ~ 8284097 (+)
G28834 NA non-coding downstream 391192 8365695 ~ 8365921 (+)
CI01000004_07654234_07655677 MRPL34 other upstream 314941 7654234 ~ 7656383 (+)
CI01000004_06571261_06572539 SEP15 other upstream 1396903 6570771 ~ 6572667 (+)
G28302 NA other upstream 1469237 6470028 ~ 6502087 (+)
G28165 NA other upstream 2238323 5732589 ~ 5733001 (+)
G27805 NA other upstream 2597521 5372825 ~ 5373803 (+)
CI01000004_08414451_08436256 NA other downstream 459202 8414316 ~ 8439933 (+)
G28859 NA other downstream 624732 8599235 ~ 8599603 (+)
CI01000004_08976512_08980033 TTPA other downstream 1001935 8976254 ~ 8980984 (+)
G30797 NA other downstream 2522873 10497376 ~ 10497788 (+)
G31710 NA other downstream 3662748 11637251 ~ 11642400 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015454 si:dkey-149i17.7 coding NC_007113.7 CM002886.2 24885987 ~ 24886752 (+)