G28779


Basic Information

Item Value
gene id G28779
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 7764512 ~ 7764711 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU32541
GATTATTAAATAGTATGTTAAATAGTAATTTTTTTTTTTTTACAATTATTGTAGTAAATGTGAAGTTTTAATTTCTTTTTTGTATTACTCTGCTTTCTTTTAAATGAACTTTATTAATTTGAGAATCGACCCTGACCTGTTACATCACAGACGCATAACCTTTGTTCAATGTAAACAGAGCAGCTGTGCCTCCACATCCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU32541 True 200 lncRNA 0.35 1 7764512 7764711

Neighbor

gene id symbol gene type direction distance location
CI01000004_07759670_07760529 RPS28P9, RPS28 coding upstream 3515 7759509 ~ 7761023 (+)
CI01000004_07712175_07712384 NA coding upstream 52110 7712175 ~ 7712402 (+)
CI01000004_07686845_07692184 NR2F6, NR2F6A, NR2F6B coding upstream 71430 7686018 ~ 7693082 (+)
CI01000004_07654234_07655677 MRPL34 coding upstream 108731 7654234 ~ 7656383 (+)
CI01000004_07642418_07645369 FITM1 coding upstream 118553 7642361 ~ 7647147 (+)
CI01000004_07775338_07780352 ANGPTL4 coding downstream 10531 7775242 ~ 7781318 (+)
CI01000004_07823292_07824588 NA coding downstream 58125 7822836 ~ 7826203 (+)
CI01000004_07843003_07860951 NA coding downstream 78292 7843003 ~ 7862424 (+)
CI01000004_07868939_07899539 PIK3R2 coding downstream 103909 7868620 ~ 7900206 (+)
CI01000004_07903583_07906667 NA coding downstream 138872 7903583 ~ 7906670 (+)
G28757 NA non-coding upstream 11130 7753066 ~ 7753382 (+)
G28754 NA non-coding upstream 20803 7743216 ~ 7743709 (+)
G28753 NA non-coding upstream 21319 7742941 ~ 7743193 (+)
G28752 NA non-coding upstream 21915 7742308 ~ 7742597 (+)
G28780 NA non-coding downstream 852 7765563 ~ 7766389 (+)
G28784 NA non-coding downstream 39555 7804266 ~ 7804653 (+)
G28790 NA non-coding downstream 57106 7821817 ~ 7822017 (+)
G28791 NA non-coding downstream 62657 7827368 ~ 7827682 (+)
G28797 NA non-coding downstream 218770 7983481 ~ 7983777 (+)
CI01000004_06571261_06572539 SEP15 other upstream 1190091 6570771 ~ 6572667 (+)
G28302 NA other upstream 1262425 6470028 ~ 6502087 (+)
G28165 NA other upstream 2031511 5732589 ~ 5733001 (+)
G27805 NA other upstream 2390709 5372825 ~ 5373803 (+)
CI01000004_08414451_08436256 NA other downstream 668994 8414316 ~ 8439933 (+)
G28859 NA other downstream 834524 8599235 ~ 8599603 (+)
CI01000004_08976512_08980033 TTPA other downstream 1211727 8976254 ~ 8980984 (+)
G30797 NA other downstream 2732665 10497376 ~ 10497788 (+)
G31710 NA other downstream 3872540 11637251 ~ 11642400 (+)

Expression


Co-expression Network