RNA id: TU32541


Basic Information

Item Value
RNA id TU32541
length 200
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G28779
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 7764512 ~ 7764711 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GATTATTAAATAGTATGTTAAATAGTAATTTTTTTTTTTTTACAATTATTGTAGTAAATGTGAAGTTTTAATTTCTTTTTTGTATTACTCTGCTTTCTTTTAAATGAACTTTATTAATTTGAGAATCGACCCTGACCTGTTACATCACAGACGCATAACCTTTGTTCAATGTAAACAGAGCAGCTGTGCCTCCACATCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32521 lncRNA upstream 3489 7759509 ~ 7761023 (+) False CI01000004_07759670_07760529
TU32519 lncRNA upstream 3489 7759647 ~ 7761023 (+) False CI01000004_07759670_07760529
TU32520 lncRNA upstream 3489 7759647 ~ 7761023 (+) True CI01000004_07759670_07760529
TU32517 lncRNA upstream 11130 7753066 ~ 7753382 (+) True G28757
TU32514 lncRNA upstream 20803 7743216 ~ 7743709 (+) True G28754
TU32542 lncRNA downstream 852 7765563 ~ 7766389 (+) True G28780
TU32546 lncRNA downstream 39555 7804266 ~ 7804653 (+) True G28784
TU32552 lncRNA downstream 57106 7821817 ~ 7822017 (+) True G28790
TU32553 lncRNA downstream 62657 7827368 ~ 7827682 (+) True G28791
TU32559 lncRNA downstream 218770 7983481 ~ 7983777 (+) True G28797
CI01000004_07759670_07760529.mRNA mRNA upstream 3515 7759618 ~ 7760997 (+) False CI01000004_07759670_07760529
CI01000004_07712175_07712384.mRNA mRNA upstream 52110 7712175 ~ 7712402 (+) True CI01000004_07712175_07712384
CI01000004_07686845_07692184.mRNA mRNA upstream 71430 7686018 ~ 7693082 (+) True CI01000004_07686845_07692184
CI01000004_07654234_07655677.mRNA mRNA upstream 108731 7654234 ~ 7655781 (+) False CI01000004_07654234_07655677
CI01000004_07642418_07645369.mRNA mRNA upstream 118553 7642361 ~ 7645959 (+) False CI01000004_07642418_07645369
CI01000004_07775338_07780352.mRNA mRNA downstream 10531 7775242 ~ 7781318 (+) True CI01000004_07775338_07780352
CI01000004_07823292_07824588.mRNA mRNA downstream 58125 7822836 ~ 7826203 (+) True CI01000004_07823292_07824588
CI01000004_07843003_07860951.mRNA mRNA downstream 78292 7843003 ~ 7862424 (+) True CI01000004_07843003_07860951
CI01000004_07868939_07899539.mRNA mRNA downstream 103909 7868620 ~ 7900206 (+) True CI01000004_07868939_07899539
CI01000004_07903583_07906667.mRNA mRNA downstream 138872 7903583 ~ 7906670 (+) True CI01000004_07903583_07906667
TU32454 other upstream 108129 7654772 ~ 7654879 (+) True G28706
TU32079 other upstream 1190091 6572819 ~ 6574421 (+) True G28354
TU32005 other upstream 1262425 6470028 ~ 6502087 (+) True G28302
TU31830 other upstream 2031511 5732589 ~ 5733001 (+) True G28165
TU31418 other upstream 2390709 5372825 ~ 5373803 (+) True G27805
TU32590 other downstream 668994 8439958 ~ 8451227 (+) True G28818
TU32637 other downstream 834524 8599235 ~ 8599603 (+) True G28859
TU32792 other downstream 1211727 8976438 ~ 8980984 (+) False CI01000004_08976512_08980033
TU32793 other downstream 1211727 8976438 ~ 8980984 (+) True CI01000004_08976512_08980033
TU34813 other downstream 2732665 10497376 ~ 10497788 (+) True G30797

Expression Profile