RNA id: TU32552


Basic Information

Item Value
RNA id TU32552
length 201
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G28790
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 7821817 ~ 7822017 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTTAATGTAAATGTTTCTTAATAAGAACAATTCTCAGTTCCCAACTTTAATGAAGAAAAAACTTTCTGTCTGCCAGGTGTAGTTAGATGTCGGGTCTACCCAGATGTGTCATGATGCATATCATATTTAATATTTAATGCTAGCTCAAAGTATTGTTTAGTTATAGCTCTTTGGTTTGTTAATAAATGCAGCTACTTGCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32546 lncRNA upstream 17164 7804266 ~ 7804653 (+) True G28784
TU32542 lncRNA upstream 55428 7765563 ~ 7766389 (+) True G28780
TU32541 lncRNA upstream 57106 7764512 ~ 7764711 (+) True G28779
TU32521 lncRNA upstream 60794 7759509 ~ 7761023 (+) False CI01000004_07759670_07760529
TU32553 lncRNA downstream 5351 7827368 ~ 7827682 (+) True G28791
TU32559 lncRNA downstream 161464 7983481 ~ 7983777 (+) True G28797
TU32562 lncRNA downstream 203474 8025491 ~ 8025898 (+) True G28800
TU32563 lncRNA downstream 206233 8028250 ~ 8033712 (+) False G28801
TU32564 lncRNA downstream 206233 8028250 ~ 8032070 (+) True G28801
CI01000004_07775338_07780352.mRNA mRNA upstream 40499 7775242 ~ 7781318 (+) True CI01000004_07775338_07780352
CI01000004_07759670_07760529.mRNA mRNA upstream 60820 7759618 ~ 7760997 (+) False CI01000004_07759670_07760529
CI01000004_07712175_07712384.mRNA mRNA upstream 109415 7712175 ~ 7712402 (+) True CI01000004_07712175_07712384
CI01000004_07686845_07692184.mRNA mRNA upstream 128735 7686018 ~ 7693082 (+) True CI01000004_07686845_07692184
CI01000004_07654234_07655677.mRNA mRNA upstream 166036 7654234 ~ 7655781 (+) False CI01000004_07654234_07655677
CI01000004_07823292_07824588.mRNA mRNA downstream 819 7822836 ~ 7826203 (+) True CI01000004_07823292_07824588
CI01000004_07843003_07860951.mRNA mRNA downstream 20986 7843003 ~ 7862424 (+) True CI01000004_07843003_07860951
CI01000004_07868939_07899539.mRNA mRNA downstream 46603 7868620 ~ 7900206 (+) True CI01000004_07868939_07899539
CI01000004_07903583_07906667.mRNA mRNA downstream 81566 7903583 ~ 7906670 (+) True CI01000004_07903583_07906667
CI01000004_07907663_07910335.mRNA mRNA downstream 85646 7907663 ~ 7910478 (+) True CI01000004_07907663_07910335
TU32454 other upstream 165434 7654772 ~ 7654879 (+) True G28706
TU32079 other upstream 1247396 6572819 ~ 6574421 (+) True G28354
TU32005 other upstream 1319730 6470028 ~ 6502087 (+) True G28302
TU31830 other upstream 2088816 5732589 ~ 5733001 (+) True G28165
TU31418 other upstream 2448014 5372825 ~ 5373803 (+) True G27805
TU32590 other downstream 611688 8439958 ~ 8451227 (+) True G28818
TU32637 other downstream 777218 8599235 ~ 8599603 (+) True G28859
TU32792 other downstream 1154421 8976438 ~ 8980984 (+) False CI01000004_08976512_08980033
TU32793 other downstream 1154421 8976438 ~ 8980984 (+) True CI01000004_08976512_08980033
TU34813 other downstream 2675359 10497376 ~ 10497788 (+) True G30797

Expression Profile