RNA id: TU32562


Basic Information

Item Value
RNA id TU32562
length 408
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G28800
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 8025491 ~ 8025898 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTCAATTTATTTTTCATAGCAGCTTGAAAGGAAGAATAACAGAGCCCACATAAAAGCACAAACACTTAAGTGCTTGTGACCTATCCAAAACCTACAAATGCATGGCAGCTGTTTACTACAGGATTCGCCTGCAGCTGCCCGCACTGGAAACGAGAGCCAACATGCTGGGCTTGTGTGGATTTCATGAAACAGACAAATAAATAACAGAATCACAAATAAACAGCCAAGCATTCCAAGACATTTCTTACAATATACATCCCTTATTTAGAAATCATTATTTGTATTTTTATATTTCCAAAAACACAGGCTAAGTGAACTTTTTGAAGTTCTCTTGCCATGATACTGGTCCCATAAGTAGAAACCTCTTGTCTTATGTTAACCAAAAAACTTAAAGGGTTAGTTCACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32559 lncRNA upstream 41714 7983481 ~ 7983777 (+) True G28797
TU32553 lncRNA upstream 197809 7827368 ~ 7827682 (+) True G28791
TU32552 lncRNA upstream 203474 7821817 ~ 7822017 (+) True G28790
TU32546 lncRNA upstream 220838 7804266 ~ 7804653 (+) True G28784
TU32542 lncRNA upstream 259102 7765563 ~ 7766389 (+) True G28780
TU32563 lncRNA downstream 2352 8028250 ~ 8033712 (+) False G28801
TU32564 lncRNA downstream 2352 8028250 ~ 8032070 (+) True G28801
TU32591 lncRNA downstream 251304 8277202 ~ 8284097 (+) True G28819
TU32606 lncRNA downstream 339797 8365695 ~ 8365921 (+) True G28834
TU32607 lncRNA downstream 342963 8368861 ~ 8369073 (+) True G28835
CI01000004_08015521_08017006.mRNA mRNA upstream 8477 8015297 ~ 8017014 (+) True CI01000004_08015521_08017006
CI01000004_07993172_07997413.mRNA mRNA upstream 28078 7993172 ~ 7997413 (+) True CI01000004_07993172_07997413
CI01000004_07987968_07989044.mRNA mRNA upstream 35962 7985367 ~ 7989529 (+) True CI01000004_07987968_07989044
CI01000004_07971396_07974484.mRNA mRNA upstream 50988 7971324 ~ 7974503 (+) True CI01000004_07971396_07974484
CI01000004_07962260_07967751.mRNA mRNA upstream 56884 7962260 ~ 7968607 (+) True CI01000004_07962260_07967751
CI01000004_08081989_08097935.mRNA mRNA downstream 55806 8081704 ~ 8098754 (+) True CI01000004_08081989_08097935
CI01000004_08108419_08111331.mRNA mRNA downstream 81828 8107726 ~ 8111666 (+) True CI01000004_08108419_08111331
CI01000004_08177656_08183324.mRNA mRNA downstream 151667 8177565 ~ 8183595 (+) True CI01000004_08177656_08183324
CI01000004_08200962_08208539.mRNA mRNA downstream 173473 8199371 ~ 8210704 (+) True CI01000004_08200962_08208539
CI01000004_08243282_08245264.mRNA mRNA downstream 217081 8242979 ~ 8245369 (+) True CI01000004_08243282_08245264
TU32454 other upstream 369108 7654772 ~ 7654879 (+) True G28706
TU32079 other upstream 1451070 6572819 ~ 6574421 (+) True G28354
TU32005 other upstream 1523404 6470028 ~ 6502087 (+) True G28302
TU31830 other upstream 2292490 5732589 ~ 5733001 (+) True G28165
TU31418 other upstream 2651688 5372825 ~ 5373803 (+) True G27805
TU32590 other downstream 407807 8439958 ~ 8451227 (+) True G28818
TU32637 other downstream 573337 8599235 ~ 8599603 (+) True G28859
TU32792 other downstream 950540 8976438 ~ 8980984 (+) False CI01000004_08976512_08980033
TU32793 other downstream 950540 8976438 ~ 8980984 (+) True CI01000004_08976512_08980033
TU34813 other downstream 2471478 10497376 ~ 10497788 (+) True G30797

Expression Profile