RNA id: CI01000004_08243282_08245264.mRNA



Basic Information


Item Value
RNA id CI01000004_08243282_08245264.mRNA
length 888
RNA type mRNA
GC content 0.40
exon number 4
gene id CI01000004_08243282_08245264
representative True

Chromosome Information


Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 8242979 ~ 8245369 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AAATATAATGCAGGAGATTCACTTCACTTTGTTTGAAACACTGATGATTTTCCAGCATATTTCTATGCAAATTTTGGGATATTGCATAAAATGCTGGATTGAGACACCATGATGCAAATAAAATTTCCAAAATTTAAGAATACTTTTATTTATGTTTTATGATTGAACCAAGTCATGTGACTAAATAATTGACTTAGATGATTGACATCTACCATCAGTCACTAATAAACATGAAGTTCTTCAGAGTGTTTTGTAATTTATTACAATTAATGAAAGATCTAAAGTTGCACCTTGAGTTGAAACATGGCTGTTAAGCTCATTTGTATATTCTGCTTCACTCGTTTTCAGTCACTACAATTGAGTCATCTGAGAACTTCTGCGGGCGGCATAACTTATTTTACAGGTGATTCCCTGTACTTCAATGCTGAAGTGTTGGGCATGAAGAGGGAAAGAGATCCTATCCCCATTGGGCCCTTGGGCTACTTCTCGGTGTATTTGTACAAGACCATTGCAAGGTTGACGGACTCCCGCCGATGGACTTTCAAAAGCATCAATGCTCTTCAAAGAGTCTTGGTGCCTCTGTCAATAGCTGTAATTTTGGGGGAGTCTGTCAGCCAACTACTGACTACGGAAGCTGGCTGGCATGTGACAGGACGTACTGGACAAGAACCTGTGCAATTCAGCACAAGATCTGGAGAACTAGTCTTTGCACCACAGGGAGACTCTAGCAGGGAAGGAAAGCCATTGGTAGACACAGCAAAACAAAACACAACAGTACAGTGAAGCCCTTAGCAACAGCGCTAAGCTGTTACACACACCTTACTGAGAACTCTTGATGGATTTGAGGAGGAAGAAATGAGCAGTGTAGCATTTCGAACAACGAAAAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU32563 lncRNA upstream 209267 8028250 ~ 8033712 (+) False G28801
TU32564 lncRNA upstream 210909 8028250 ~ 8032070 (+) True G28801
TU32562 lncRNA upstream 217081 8025491 ~ 8025898 (+) True G28800
TU32559 lncRNA upstream 259202 7983481 ~ 7983777 (+) True G28797
TU32553 lncRNA upstream 415297 7827368 ~ 7827682 (+) True G28791
TU32591 lncRNA downstream 31833 8277202 ~ 8284097 (+) True G28819
TU32606 lncRNA downstream 120326 8365695 ~ 8365921 (+) True G28834
TU32607 lncRNA downstream 123492 8368861 ~ 8369073 (+) True G28835
TU32618 lncRNA downstream 165357 8410726 ~ 8411220 (+) False G28843
TU32616 lncRNA downstream 165443 8410812 ~ 8411220 (+) True G28843
CI01000004_08200962_08208539.mRNA mRNA upstream 32275 8199371 ~ 8210704 (+) True CI01000004_08200962_08208539
CI01000004_08177656_08183324.mRNA mRNA upstream 59384 8177565 ~ 8183595 (+) True CI01000004_08177656_08183324
CI01000004_08108419_08111331.mRNA mRNA upstream 131313 8107726 ~ 8111666 (+) True CI01000004_08108419_08111331
CI01000004_08081989_08097935.mRNA mRNA upstream 144225 8081704 ~ 8098754 (+) True CI01000004_08081989_08097935
CI01000004_08015521_08017006.mRNA mRNA upstream 225965 8015297 ~ 8017014 (+) True CI01000004_08015521_08017006
CI01000004_08252556_08257067.mRNA mRNA downstream 7025 8252394 ~ 8258093 (+) True CI01000004_08252556_08257067
CI01000004_08302613_08354790.mRNA mRNA downstream 57244 8302613 ~ 8354795 (+) True CI01000004_08302613_08354790
CI01000004_08382042_08402126.mRNA mRNA downstream 135103 8380472 ~ 8402514 (+) True CI01000004_08382042_08402126
CI01000004_08414451_08436256.mRNA mRNA downstream 168947 8414316 ~ 8436263 (+) False CI01000004_08414451_08436256
CI01000004_08458998_08503889.mRNA mRNA downstream 213629 8458998 ~ 8503992 (+) True CI01000004_08458998_08503889
TU32454 other upstream 586596 7654772 ~ 7654879 (+) True G28706
TU32079 other upstream 1668558 6572819 ~ 6574421 (+) True G28354
TU32005 other upstream 1740892 6470028 ~ 6502087 (+) True G28302
TU31830 other upstream 2509978 5732589 ~ 5733001 (+) True G28165
TU31418 other upstream 2869176 5372825 ~ 5373803 (+) True G27805
TU32590 other downstream 188336 8439958 ~ 8451227 (+) True G28818
TU32637 other downstream 353866 8599235 ~ 8599603 (+) True G28859
TU32792 other downstream 731069 8976438 ~ 8980984 (+) False CI01000004_08976512_08980033
TU32793 other downstream 731069 8976438 ~ 8980984 (+) True CI01000004_08976512_08980033
TU34813 other downstream 2252007 10497376 ~ 10497788 (+) True G30797

Expression Profile