RNA id: TU32563


Basic Information

Item Value
RNA id TU32563
length 3992
lncRNA type antisense_over
GC content 0.43
exon number 3
gene id G28801
representative False

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 8028250 ~ 8033712 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTGTGCTTAAAGCTTTTGTTTTCTTTTTACAGCTTAAAAGTGTTAGATTCTCATAAACACACAGTGAAATCAATACATGCTTTTATTAAAGAGAAAACAAATTGTTGAAAATATTTCAGTTTGAAACAGTACACTGCACTTATTTTTAAAGACACAATGGGGACATTCTCAGATTTAAGTGACATTACTTAATTTTTCTTTCTGGAAAAAATAAATGTTGTAAAAGACATGAATATTATATGAACAATCCTATGTTTGCACGGATCATGCACTGGCTTTTTCATCCCTATAAAATGTATGTTTTCAACTCAGACACACTGCCTTTGTGATGTTTCATACATAATTGGGATCTGATACACAGACTATGCTTTTTGGCTTTAACCTCAAATATGAGAATGCTAACTCCTTGCCAGAACATATAACAGTTATTCCCAATTGTTTACACACAAAAACCTGAAACTCACCAAATCCCTAAACCAAGTCTGCAAAATTGCAGGCAAAGTCCCTGCTTTACCTTCAGTTTTCAATTCTATATCACCCTGTTTGCAAAACACAACACACAGTTCTCTACATTTGGCACAACATTCAAATTCTCTTTAGTTCCTTTGGAAAGCAACACCAGTCACAATGCCAAGCTCTTTACACCAATTGGCCACACCCATTCCTCACTGGTGTAACAGCAGTTGCTGAATTGTTCACCTTAGAAATCAGAGCTTTGGCACTAGACACAAATGATCTTTCCTATTTTGGAGGTAATTGGAAGGAGCAGCTAGAGGTGAAGGAGTGAGAGTAGAGGAGAATGAGGAAAGACAGTTGTCTCAGATAAGTTCAGAGGTGGGCTCATTCCAGCAAGCAGATGGGTGGACCAGAGCAGCCCAGGTATGTTGTGATCTGGGACAACCTGAATTTCCACCAGATTGATCTGCCAACCACAGTTCTATTCCTCCTAACATATTCCTCATTCCTAAACCTAGAGGGTTTTTTTCTGGCATGATAGTGGCATGGAAAGTGTCTGACTGCCATTCCCTTGCATGTATGCCTCTTCTCGAGACACTGGAGAATGCATGTGGTGAGGTTGTTGCGCAGGCTTTTGGCGTCTGGATCCATCAGTCCAGAATTTTCTCCCCCTACTGTTTAGCCAGGGAGAACATTGCTTGAAGATGAGGTGCTTTGACCAGACCAAAATGGGAGGCGAGATGCAGCCTAATTTCTTTAGTGTGTGTGTTTAGACTTTTTAAAAAAAGAGCCACTTTCATTTTTAATTTTTGTACAGAAAACCCTTTATCTTACTCAATGTTTTACTTTTTCATTCAAAACACAACTGTTCAAAAATACTTTGGAAATATTTTAGAAATACTGTTAAAGTTTTTGTTACTGTATTGCATTTGTGTGTTTTTATATATATTTGAGTAGGTATACAGTACTGTAACTATCTTTTACAACCAGCTTCAGGGTAACGCTAACAATGCAAACTGATGGGATTTCATAGTAGTGTTTTCTGTTGAGCACATCAGTGTGATGTTGACTGGTAGATAGATCTCTTTATATGACGTGTGTGTGTGTGTGTGTGTTCTTGTATATATGGTTTATGAGGACACAAATGTGTATAATGACATTAGTATCACTTTCTGTCCTCGTAAACCAAATGGCTTAAAAACATACGTTTCAAGTTTTCTGTAGGTTTAGGGAATATACAGTTTGTACAATATAAAAACCATTATGCCTATGGAGAGTCCCCGTAAACTACATATGTGTGTGTGTGTGTGTGTGTGTGTGTCATTTTAGTGCAAAAAAACATTTTGGAAAGCGATAAAACAGTGTTGAATGCAGTGTTTGCTTTTGCTAGAGATTTGTATAGTTTTGCATTTTGTGGTTTTGGGGAAATGGGCCAAAGATCCAGTAAATGGGTGTAAACAATTGGGAAAAACTGTATTAAAGTACATTGGTTAAAACTTTTCAGTTCTGAGTAGAACTTTAGAGTGAATAAGTGCATGACACCAACGGTCTTTCAGTATTCCTCATCAAACTGGAAATGGTGACATCATATGCCAACAGAAAAGCTCTGGCAGACACCAGCCTGAATCACTGTTGCCAAAACAGATTTGATTCACTAGGCTGTGCCAAAAAGTGTTTCTCCACTTCTCAGGGTCATATAACCACTAAACACCAACAGGGGGCACTCTTGACCAAGTCAATATGGAAAATATTGCAGCTCCTCTGCGCAGACATTTATTTGGATGCACATAACCAAACATGTTTGACATGATAAATACTTAATAATGGGCAATAAAAATCAATAACCTCTTTGAGCTTCACATAATACAGCAGTCAAAGACAACTTCACAATGGCACTTCATCAATAGACAAAAACTTCACATTGATTCACAATAACCTCAATCACAGGTGGCATTAATTCAAGGCCTGAAAAATCAAACTCCACAAAAATATTTATAAAACAATAACTTTGTAATTGATTCACTTTATCGGAGAATCAAGGATCTCTTCATACTCCTGTCTTTTGCTCTTGCCCACCCAGTAAAGCTTTACAGCCGTCAGCACGACAACACTGATGATGATGACGACGCCCCCAATGATGTCATACACTGAAGGAACCATGTGGAGCACAATCAGCTGCAGAAGCATTGCCACAACAATTTCCATATGCTGCACGGTGCTAACCAGTGCTGGATGGAACTTGTTGAGGGCGTAATATACCCCCAGGAACGCCACGGTGGAGCAGACGCAGATGCCAATTAGATAGCCCCACGTCTCTCCGTCCAGTGGAATGATGGGCTCCTGCAGGATGAACATAGTTGACACTCCCCACACCGTTCCGGTCCAGCCAAAGGTGAAAAGTGCTGTCCACATGCTCACTTTTTCTTTGATAGCGCGGTATATGATCATGGACAAGGCCGCCATTAAGCCCGCCATCACCGTCATGGTGTAGCCAAAAGCCTCCTTCCAGAAACCCAGAGATCTGTGCTCACCTAAGATGTTGGGAATCATGACCAAGCAGAGGCCGAAGACGCTACTGACAACCGTCACCACATCTGTCATGCCCAGTCGCTCATCGATGAGTAAAAATGCCAGTATGGCGCTGAAGACCGTTGTGGTGGCCCTCCACATGATGGTGCCGTTGCTGGGTGGCACGATGGCAAAGGAGGTATACGCACACGTGATGGAGATGACATTGCACACGCCATAGAAGAAAAGACGCAGTCTGTAGCCTTGGGGGCCGAAGGGAGGCTCCTGGTTATAAAACACCACTGCAATGGACAACACCTGGATGACCGAGCGGATGAAGAGAAGCTCCAGCGACGGCACCCTAGAGCAGTCGGCAGCCAGGCGTGTGATGAGAGCCACACAGCCGTGGGCCAGAGCCGCCCCGAACAAAGCGGCCCACGTCATACGTGAGGTGAACACGGAGGCCTCCCCGAAGCTCTGCAGCTGACCTCCGACCCCTTTGTCTTTTTGGTCCCCAGTTGGTTTGGACCGACTGTCAAGCGCACCAAAAAAAGTCCTGCCCGATTTGCTGTCGGTAAGACTCTTTCTATCTGAGGTCTCTTCGACAAATGAGCCGAAGTCTTCAAAAGATGGAGCGTCATCATAGCCCTCGTCTCCAGGCTGGGGGAAATGAGTGGCGTATTTGACTGTCACTGTGTTCGGGTGGATTTTGACTCGCTTCTTTGAGCCAAGCAGATGTTTTGTTGGTGAATCCTCCATTTTCTTACAATACCAGCTGTCGTGTAGCTCCTGACTGTTCTCTCAGATGCCTCTCGCAAAAGATCCGCGAATTAACGTATTAAATCCAGTGATCATTGTTGTGTTTTTGAGGTAATATGTTTATTTTCCCCCATGTCTTTTGTATGGAAATGTTTTTAGATTAGTCTAAAATGAATAATAGCGGGGCACCTCGACTCCAGTCAGCTCGCAGTAGGTCTCACAGTGGCTTTCCTCGCAGGGATGCTTGGTACTGGACTCTGAGATCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32562 lncRNA upstream 2352 8025491 ~ 8025898 (+) True G28800
TU32559 lncRNA upstream 44473 7983481 ~ 7983777 (+) True G28797
TU32553 lncRNA upstream 200568 7827368 ~ 7827682 (+) True G28791
TU32552 lncRNA upstream 206233 7821817 ~ 7822017 (+) True G28790
TU32546 lncRNA upstream 223597 7804266 ~ 7804653 (+) True G28784
TU32591 lncRNA downstream 243490 8277202 ~ 8284097 (+) True G28819
TU32606 lncRNA downstream 331983 8365695 ~ 8365921 (+) True G28834
TU32607 lncRNA downstream 335149 8368861 ~ 8369073 (+) True G28835
TU32618 lncRNA downstream 377014 8410726 ~ 8411220 (+) False G28843
TU32616 lncRNA downstream 377100 8410812 ~ 8411220 (+) True G28843
CI01000004_08015521_08017006.mRNA mRNA upstream 11236 8015297 ~ 8017014 (+) True CI01000004_08015521_08017006
CI01000004_07993172_07997413.mRNA mRNA upstream 30837 7993172 ~ 7997413 (+) True CI01000004_07993172_07997413
CI01000004_07987968_07989044.mRNA mRNA upstream 38721 7985367 ~ 7989529 (+) True CI01000004_07987968_07989044
CI01000004_07971396_07974484.mRNA mRNA upstream 53747 7971324 ~ 7974503 (+) True CI01000004_07971396_07974484
CI01000004_07962260_07967751.mRNA mRNA upstream 59643 7962260 ~ 7968607 (+) True CI01000004_07962260_07967751
CI01000004_08081989_08097935.mRNA mRNA downstream 47992 8081704 ~ 8098754 (+) True CI01000004_08081989_08097935
CI01000004_08108419_08111331.mRNA mRNA downstream 74014 8107726 ~ 8111666 (+) True CI01000004_08108419_08111331
CI01000004_08177656_08183324.mRNA mRNA downstream 143853 8177565 ~ 8183595 (+) True CI01000004_08177656_08183324
CI01000004_08200962_08208539.mRNA mRNA downstream 165659 8199371 ~ 8210704 (+) True CI01000004_08200962_08208539
CI01000004_08243282_08245264.mRNA mRNA downstream 209267 8242979 ~ 8245369 (+) True CI01000004_08243282_08245264
TU32454 other upstream 371867 7654772 ~ 7654879 (+) True G28706
TU32079 other upstream 1453829 6572819 ~ 6574421 (+) True G28354
TU32005 other upstream 1526163 6470028 ~ 6502087 (+) True G28302
TU31830 other upstream 2295249 5732589 ~ 5733001 (+) True G28165
TU31418 other upstream 2654447 5372825 ~ 5373803 (+) True G27805
TU32590 other downstream 399993 8439958 ~ 8451227 (+) True G28818
TU32637 other downstream 565523 8599235 ~ 8599603 (+) True G28859
TU32792 other downstream 942726 8976438 ~ 8980984 (+) False CI01000004_08976512_08980033
TU32793 other downstream 942726 8976438 ~ 8980984 (+) True CI01000004_08976512_08980033
TU34813 other downstream 2463664 10497376 ~ 10497788 (+) True G30797

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00032292 True 2411 mRNA 0.44 2 NC_007113.7 24990398 ~ 24996441 (-)
rainbow trout (Oncorhynchus mykiss) TU2708060 True 817 lncRNA 0.41 1 NW_023493723.1 139696 ~ 140512 (-)
eurasian perch (Perca fluviatilis) TU306499 True 3435 lncRNA 0.41 8 NC_053134.1 5186966 ~ 5204159 (+)
bowfin (Amia calva) TU45034 True 206 lncRNA 0.37 1 CM030124.1 36167966 ~ 36168171 (-)