CI01000004_07962260_07967751 (RAB3A.L, RAB3A, RAB3AA, RAB3AB)


Basic Information

Item Value
gene id CI01000004_07962260_07967751
gene name RAB3A.L, RAB3A, RAB3AA, RAB3AB
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 7962260 ~ 7968607 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_07962260_07967751.mRNA
GTGGCCTGATTAATTCTGAAAAGAGCAGGAATGAACATTCAGAGATGGCCTCAGCAAATGATGCTCGATATGGACAAAAAGAGTCTACGGATCAGAATTTTGATTACATGTTTAAGATCCTGATCATTGGTAACAGCAGTGTCGGAAAAACCAGTTTCCTGTTCCGCTATGCTGATGACTCCTTCACACCTGCTTTCGTCAGCACTGTCGGCATAGACTTCAAAGTGAAGACCATCTATCGGAATGACAAGAGGATAAAGCTCCAAATATGGGACACTGCTGGACAGGAAAGGTACAGGACCATCACCACTGCATACTATCGTGGAGCTATGGGCTTCATTCTTATGTATGACATCACCAATGGGGATTCCTTTAATGCCGTTCAGGACTGGTCCACACAGATTAAGACATATTCATGGGACAATGCTCAAGTGCTGCTGGTGGGAAATAAGTGTGACATGGAAGACGAAAGAGTGGTTGCTTCAGAGAGAGGAAGACAGCTGTCCGAACAGTTAGGCTTTGAGTTTTTTGAGGCCAGTGCCAAGGACAACATCAACGTGAAGCAGACATTTGAGCGTCTGGTGGACATAATCTGTGACAGGATGTCCGAGAACCTGGAGTCGGCGGATCCGTCCATCATTGGAAACAAGCAGGGCCCTCAGCTTAATGAGCAGCCACAGCGCTCCACCAAGGAGTGCGCTTGCTAAGGGTCGCTTTCAACCTGTCAACCATTCCCCTGCAGATCGAACAATGGACCGCTCTATGAAGGAAGGCTTCGGTAAGAGAAGAGCTGATGGGATGCGGCTGAGAGCCTGCCATCTCTCTGTCACTTTTGTGAGGTTGACATCAGCGCATTTGTGTTGGTATTAGTAGCCGATGCTCTCATCTCATAATAATTTAACTATCTTTATAGTACTTTTTGACTAAATTTCTGAAAAATCAGAAGTATATTTTGTGTCAAATGAATTCCAACGTGAAATGTTCATGAGCATTTTTATGTATGTTTTGGGTTTCATCAAAGTCAAATTCACACAAATATCCTTAATACATTGCCAAGAGATGTTTTTATTCTTTTCTAAACCGACCAATATACAGTGGGACCAGACTCTTGTGTGGAAACCATCAGCATAAAGGCTCATCCCAAGATAGATAGTTTGAATGAATCCTAAGCTTGAATGTTTCATAAAGTACTGTTTCACTCTTTTATTTATTTTTTTTAGTTAAAGAGTGAAAACTGAATGAAAACACTAATTTGCTCCCTATTACTTTTAAATAACAGCAGGTGTATAAAACATATTATATAAGTAAAAATGGTATATGTGAAATAATAGATGTAATTAGAATGAAATAACTATTATGTGCTTAATTGCTTCTTGTTTTTGTAATATGAAGGAATTAATGAATTTAAGTGGTTTTTCAGTTACATGTTCTGCTTTTACTCCGGTTCCTCCGCATGGTGGACTCAAACTCCTCATTTTCCCATGAAAAAAAACGTGTGAGTGTCTGTGTGCATGTTAGTATGTCATCCTAGTATATATATAGCTTCTACAGGCTGAAAACACA

Function

symbol description
rab3aa Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in several processes, including maintenance of presynaptic active zone structure; regulation of vesicle-mediated transport; and secretion by cell. Predicted to act upstream of or within protein transport. Predicted to be located in membrane. Predicted to be active in axon; cytoplasmic vesicle; and plasma membrane. Predicted to be anchored component of synaptic vesicle membrane. Orthologous to human RAB3A (RAB3A, member RAS oncogene family).
rab3ab Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in several processes, including maintenance of presynaptic active zone structure; regulation of vesicle-mediated transport; and secretion by cell. Predicted to act upstream of or within protein transport. Predicted to be located in membrane. Predicted to be active in axon; cytoplasmic vesicle; and plasma membrane. Predicted to be anchored component of synaptic vesicle membrane. Orthologous to human RAB3A (RAB3A, member RAS oncogene family).
rab3a Enables GTPase activity and myosin V binding activity. Involved in several processes, including acrosomal vesicle exocytosis; plasma membrane repair; and regulation of plasma membrane repair. Located in perinuclear region of cytoplasm.

GO:

id name namespace
GO:0008021 synaptic vesicle cellular_component

KEGG:

id description
K07882 RAB3A; Ras-related protein Rab-3A

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_07962260_07967751.mRNA True 1563 mRNA 0.40 5 7962260 7968607

Neighbor

gene id symbol gene type direction distance location
CI01000004_07954612_07959231 PDE4C, PDE4CA coding upstream 2534 7954236 ~ 7959726 (+)
CI01000004_07945349_07952716 NA coding upstream 9544 7945056 ~ 7952716 (+)
CI01000004_07911608_07916117 NA coding upstream 46105 7911608 ~ 7916155 (+)
CI01000004_07907663_07910335 MPV17L2 coding upstream 51782 7907663 ~ 7910478 (+)
CI01000004_07903583_07906667 NA coding upstream 55590 7903583 ~ 7906670 (+)
CI01000004_07971396_07974484 NA coding downstream 2717 7971324 ~ 7974503 (+)
CI01000004_07987968_07989044 AGTR1A coding downstream 16760 7985367 ~ 7989529 (+)
CI01000004_07993172_07997413 GYG1A coding downstream 24565 7993172 ~ 7997413 (+)
CI01000004_08015521_08017006 NA coding downstream 46690 8015297 ~ 8017014 (+)
CI01000004_08081989_08097935 STAG1, STAG1A, STAG1B coding downstream 113097 8081704 ~ 8098754 (+)
G28791 NA non-coding upstream 134578 7827368 ~ 7827682 (+)
G28790 NA non-coding upstream 140243 7821817 ~ 7822017 (+)
G28784 NA non-coding upstream 157607 7804266 ~ 7804653 (+)
G28780 NA non-coding upstream 195871 7765563 ~ 7766389 (+)
G28779 NA non-coding upstream 197549 7764512 ~ 7764711 (+)
G28797 NA non-coding downstream 14874 7983481 ~ 7983777 (+)
G28800 NA non-coding downstream 56884 8025491 ~ 8025898 (+)
G28801 NA non-coding downstream 59643 8028250 ~ 8033712 (+)
G28819 NA non-coding downstream 308595 8277202 ~ 8284097 (+)
G28834 NA non-coding downstream 397088 8365695 ~ 8365921 (+)
CI01000004_07654234_07655677 MRPL34 other upstream 305877 7654234 ~ 7656383 (+)
CI01000004_06571261_06572539 SEP15 other upstream 1387839 6570771 ~ 6572667 (+)
G28302 NA other upstream 1460173 6470028 ~ 6502087 (+)
G28165 NA other upstream 2229259 5732589 ~ 5733001 (+)
G27805 NA other upstream 2588457 5372825 ~ 5373803 (+)
CI01000004_08414451_08436256 NA other downstream 465098 8414316 ~ 8439933 (+)
G28859 NA other downstream 630628 8599235 ~ 8599603 (+)
CI01000004_08976512_08980033 TTPA other downstream 1007831 8976254 ~ 8980984 (+)
G30797 NA other downstream 2528769 10497376 ~ 10497788 (+)
G31710 NA other downstream 3668644 11637251 ~ 11642400 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015453 rab3aa coding NC_007113.7 CM002886.2 24867534 ~ 24878813 (+)