G28800


Basic Information

Item Value
gene id G28800
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 8025491 ~ 8025898 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU32562
GTTCAATTTATTTTTCATAGCAGCTTGAAAGGAAGAATAACAGAGCCCACATAAAAGCACAAACACTTAAGTGCTTGTGACCTATCCAAAACCTACAAATGCATGGCAGCTGTTTACTACAGGATTCGCCTGCAGCTGCCCGCACTGGAAACGAGAGCCAACATGCTGGGCTTGTGTGGATTTCATGAAACAGACAAATAAATAACAGAATCACAAATAAACAGCCAAGCATTCCAAGACATTTCTTACAATATACATCCCTTATTTAGAAATCATTATTTGTATTTTTATATTTCCAAAAACACAGGCTAAGTGAACTTTTTGAAGTTCTCTTGCCATGATACTGGTCCCATAAGTAGAAACCTCTTGTCTTATGTTAACCAAAAAACTTAAAGGGTTAGTTCACCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU32562 True 408 lncRNA 0.37 1 8025491 8025898

Neighbor

gene id symbol gene type direction distance location
CI01000004_08015521_08017006 NA coding upstream 8477 8015297 ~ 8017014 (+)
CI01000004_07993172_07997413 GYG1A coding upstream 28078 7993172 ~ 7997413 (+)
CI01000004_07987968_07989044 AGTR1A coding upstream 35962 7985367 ~ 7989529 (+)
CI01000004_07971396_07974484 NA coding upstream 50988 7971324 ~ 7974503 (+)
CI01000004_07962260_07967751 RAB3A.L, RAB3A, RAB3AA, RAB3AB coding upstream 56884 7962260 ~ 7968607 (+)
CI01000004_08081989_08097935 STAG1, STAG1A, STAG1B coding downstream 55806 8081704 ~ 8098754 (+)
CI01000004_08108419_08111331 MSL2A coding downstream 81828 8107726 ~ 8111666 (+)
CI01000004_08177656_08183324 PPP2R3A coding downstream 151667 8177565 ~ 8183595 (+)
CI01000004_08200962_08208539 PPP2R3A coding downstream 173473 8199371 ~ 8210704 (+)
CI01000004_08243282_08245264 NA coding downstream 217081 8242979 ~ 8245369 (+)
G28797 NA non-coding upstream 41714 7983481 ~ 7983777 (+)
G28791 NA non-coding upstream 197809 7827368 ~ 7827682 (+)
G28790 NA non-coding upstream 203474 7821817 ~ 7822017 (+)
G28784 NA non-coding upstream 220838 7804266 ~ 7804653 (+)
G28780 NA non-coding upstream 259102 7765563 ~ 7766389 (+)
G28801 NA non-coding downstream 2352 8028250 ~ 8033712 (+)
G28819 NA non-coding downstream 251304 8277202 ~ 8284097 (+)
G28834 NA non-coding downstream 339797 8365695 ~ 8365921 (+)
G28835 NA non-coding downstream 342963 8368861 ~ 8369073 (+)
G28843 NA non-coding downstream 384828 8410726 ~ 8411220 (+)
CI01000004_07654234_07655677 MRPL34 other upstream 369108 7654234 ~ 7656383 (+)
CI01000004_06571261_06572539 SEP15 other upstream 1451070 6570771 ~ 6572667 (+)
G28302 NA other upstream 1523404 6470028 ~ 6502087 (+)
G28165 NA other upstream 2292490 5732589 ~ 5733001 (+)
G27805 NA other upstream 2651688 5372825 ~ 5373803 (+)
CI01000004_08414451_08436256 NA other downstream 407807 8414316 ~ 8439933 (+)
G28859 NA other downstream 573337 8599235 ~ 8599603 (+)
CI01000004_08976512_08980033 TTPA other downstream 950540 8976254 ~ 8980984 (+)
G30797 NA other downstream 2471478 10497376 ~ 10497788 (+)
G31710 NA other downstream 3611353 11637251 ~ 11642400 (+)

Expression


Co-expression Network