RNA id: TU2708060


Basic Information

Item Value
RNA id TU2708060
length 817
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G2360591
representative True

Chromosome Information

Item Value
chromosome id NW_023493723.1
NCBI id JAAXML020000439.1
chromosome length 277254
location 139696 ~ 140512 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTCATTTCTGAATGTAAGGATGACAGATGCAACCTGGTAGCGGCTCAGGTTGGGCTGAACTCTCTGCTCAGCCTCCCTCATACTCAATCATCAATGTTGAGCAAATGGTCAACCAATGTGGCCCTGATCTCATCTGAGACAACTGTccttcctcgtcctcctcttaCTCTCACTCTTTCAGCTCTAGCTCTAGCTCTAGCTTCACCATTGACTTCCATTTTcctccagaacaggagagctcATCTGTGGCCTTTTATAGTGCTAAAGCTCTGATTTCTAAGTGAACAATTCAGCAACTAGTGTTTACACCTGTGAGGAGTGGGTGTTGCCAATTGGTGTATAGAGCTTGGCATTGTGATTGGCGTTGCTTTCCAAAGGGACTAAAGAGATTTGTTGTGCCTAATGTAGAGAACTGCATGTAGTGTTTTGCAAAAAGTGTGATATAGAATTgaaaactgagtgtaaagcagGAATTGTGCTTGCAATTTTGCAGACTTGGTTTAGGGATTTGGTACATGAGTTTCAGGTTTCTGTGATTGTGTTTCAAGTTCTAATTTTAGTGTGTAAACAACTGGGaaaaacagttttggaaacactGTGTCAGCATTTGAAAACATGTGCTGCAAATATAGAGTTTAGCAGGCGGTGGAGTATGAATGAAAAAAGAGTTCATGGATTTTGGAGAATGTggtcattgaatgcattttgtgtgAAAGCAATGAAAAATGATTCACCATTTGGTCCACATACACTTCTGTTTGGctgactgtgtgaagagttttgacaatgtgacttcagttttgaccaatgcatgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2708058 lncRNA downstream 1630 137752 ~ 138066 (-) True G2360589
TU2708056 lncRNA downstream 2385 137097 ~ 137311 (-) True G2360587
TU2708054 lncRNA downstream 3605 135691 ~ 136091 (-) True G2360585
TU2708052 lncRNA downstream 6620 132851 ~ 133076 (-) True G2360583
TU2708040 lncRNA downstream 17772 121478 ~ 121924 (-) True G2360571
TU2708130 lncRNA upstream 61499 202011 ~ 202328 (-) True G2360654
TU2708019 other downstream 37198 101995 ~ 102498 (-) True G2360551
TU2707926 other downstream 106502 24180 ~ 33194 (-) False G2360461

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00058049 False 3866 lncRNA 0.36 1 NC_007115.7 7598400 ~ 7602265 (-)
grasscarp (Ctenopharyngodon idella) TU32563 False 3992 lncRNA 0.43 3 CI01000004 8028250 ~ 8033712 (+)
eurasian perch (Perca fluviatilis) TU306499 True 3435 lncRNA 0.41 8 NC_053134.1 5186966 ~ 5204159 (+)
bowfin (Amia calva) TU92615 True 318 lncRNA 0.48 1 CM030128.1 38662138 ~ 38662455 (-)
tiger barb (Puntius tetrazona) TU92615 True 233 lncRNA 0.34 1 NC_056706.1 9702959 ~ 9703191 (-)
mexican tetra (Astyanax mexicanus) TU92615 True 248 lncRNA 0.38 1 NC_035903.1 33985420 ~ 33985667 (+)