Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU32591 |
| length | 6871 |
| lncRNA type | inter_gene |
| GC content | 0.52 |
| exon number | 2 |
| gene id | G28819 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000004 |
| NCBI id | null |
| chromosome length | 17451736 |
| location | 8277202 ~ 8284097 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU32563 | lncRNA | upstream | 243490 | 8028250 ~ 8033712 (+) | False | G28801 |
| TU32564 | lncRNA | upstream | 245132 | 8028250 ~ 8032070 (+) | True | G28801 |
| TU32562 | lncRNA | upstream | 251304 | 8025491 ~ 8025898 (+) | True | G28800 |
| TU32559 | lncRNA | upstream | 293425 | 7983481 ~ 7983777 (+) | True | G28797 |
| TU32553 | lncRNA | upstream | 449520 | 7827368 ~ 7827682 (+) | True | G28791 |
| TU32606 | lncRNA | downstream | 81598 | 8365695 ~ 8365921 (+) | True | G28834 |
| TU32607 | lncRNA | downstream | 84764 | 8368861 ~ 8369073 (+) | True | G28835 |
| TU32618 | lncRNA | downstream | 126629 | 8410726 ~ 8411220 (+) | False | G28843 |
| TU32616 | lncRNA | downstream | 126715 | 8410812 ~ 8411220 (+) | True | G28843 |
| TU32623 | lncRNA | downstream | 186648 | 8470745 ~ 8471884 (+) | True | G28848 |
| CI01000004_08252556_08257067.mRNA | mRNA | upstream | 19109 | 8252394 ~ 8258093 (+) | True | CI01000004_08252556_08257067 |
| CI01000004_08243282_08245264.mRNA | mRNA | upstream | 31833 | 8242979 ~ 8245369 (+) | True | CI01000004_08243282_08245264 |
| CI01000004_08200962_08208539.mRNA | mRNA | upstream | 66498 | 8199371 ~ 8210704 (+) | True | CI01000004_08200962_08208539 |
| CI01000004_08177656_08183324.mRNA | mRNA | upstream | 93607 | 8177565 ~ 8183595 (+) | True | CI01000004_08177656_08183324 |
| CI01000004_08108419_08111331.mRNA | mRNA | upstream | 165536 | 8107726 ~ 8111666 (+) | True | CI01000004_08108419_08111331 |
| CI01000004_08302613_08354790.mRNA | mRNA | downstream | 18516 | 8302613 ~ 8354795 (+) | True | CI01000004_08302613_08354790 |
| CI01000004_08382042_08402126.mRNA | mRNA | downstream | 96375 | 8380472 ~ 8402514 (+) | True | CI01000004_08382042_08402126 |
| CI01000004_08414451_08436256.mRNA | mRNA | downstream | 130219 | 8414316 ~ 8436263 (+) | False | CI01000004_08414451_08436256 |
| CI01000004_08458998_08503889.mRNA | mRNA | downstream | 174901 | 8458998 ~ 8503992 (+) | True | CI01000004_08458998_08503889 |
| CI01000004_08507941_08515797.mRNA | mRNA | downstream | 223844 | 8507941 ~ 8516308 (+) | True | CI01000004_08507941_08515797 |
| TU32454 | other | upstream | 620819 | 7654772 ~ 7654879 (+) | True | G28706 |
| TU32079 | other | upstream | 1702781 | 6572819 ~ 6574421 (+) | True | G28354 |
| TU32005 | other | upstream | 1775115 | 6470028 ~ 6502087 (+) | True | G28302 |
| TU31830 | other | upstream | 2544201 | 5732589 ~ 5733001 (+) | True | G28165 |
| TU31418 | other | upstream | 2903399 | 5372825 ~ 5373803 (+) | True | G27805 |
| TU32590 | other | downstream | 149608 | 8439958 ~ 8451227 (+) | True | G28818 |
| TU32637 | other | downstream | 315138 | 8599235 ~ 8599603 (+) | True | G28859 |
| TU32792 | other | downstream | 692341 | 8976438 ~ 8980984 (+) | False | CI01000004_08976512_08980033 |
| TU32793 | other | downstream | 692341 | 8976438 ~ 8980984 (+) | True | CI01000004_08976512_08980033 |
| TU34813 | other | downstream | 2213279 | 10497376 ~ 10497788 (+) | True | G30797 |
