RNA id: TU32542


Basic Information

Item Value
RNA id TU32542
length 827
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G28780
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 7765563 ~ 7766389 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCTCTGTTTATCCCGAGGTTTACCGTAGTCAGCCGGATCCGGGCCGTATCCAGATCAGATGGAGGACCTGTGCCTAAATATAAACACAACACATCTCTGAAGTGTCAGCAGAGATTGTGTCAACTAGACTATCCCCTGTGAAGGCCTCATTGACACGACAGCCAGTGGCACAGATCCTCAACAAACCCGTCTCCGTACCGGCTTAATGAATCCGATCTTCAACCAGATGGAACTGAATGTTCCGATCCAATCTTACTTCTGATCTGTAATGCTGCCTGAATCATAATCATGCACTGTTCGTTTGTTGGCTAGAGGAGAACTGGCCCCTCGACTAAGCCTGTTTTTTTTCTGCATTCTGTCACCTGATGGAGTTTGGGTTCCTTGCTACTGTTGCCTCTGGCTTGCTTAGTTGGGGACACTTAATATTCAACAATATTACTGATCTGTCTGCAGTGTAACCTTTGTATGAGAACTGAAATGAGCTAGACGATGACATCACTGTTTTCTCCAGAGCTGCTGTATAAATAAATGAACTAAGTTAATAACTCTATTTTTAAAACGGAAATGACTCAACACTGAACTTTCTTAAGCTGGACAATGACACTATTTTCTTCTAGAGCTGATGTACAGCCAAAACAAACTTTGTTACATTATCTTCCTGTTATTAATGTAAAGCTATTTTGAAACAATCTGTATTGTAAAAAGCGTTATATAAATAAAGGTGTCTTGACTTGACTTGACTAGTCATTGTTTTCTTTGTCTCTGTTTTCCCTGTGTTCGAGTTAATCATTAGTTGTAATGGTTTCCGATTAGTTCACAACTGTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32541 lncRNA upstream 852 7764512 ~ 7764711 (+) True G28779
TU32521 lncRNA upstream 4540 7759509 ~ 7761023 (+) False CI01000004_07759670_07760529
TU32519 lncRNA upstream 4540 7759647 ~ 7761023 (+) False CI01000004_07759670_07760529
TU32520 lncRNA upstream 4540 7759647 ~ 7761023 (+) True CI01000004_07759670_07760529
TU32517 lncRNA upstream 12181 7753066 ~ 7753382 (+) True G28757
TU32546 lncRNA downstream 37877 7804266 ~ 7804653 (+) True G28784
TU32552 lncRNA downstream 55428 7821817 ~ 7822017 (+) True G28790
TU32553 lncRNA downstream 60979 7827368 ~ 7827682 (+) True G28791
TU32559 lncRNA downstream 217092 7983481 ~ 7983777 (+) True G28797
TU32562 lncRNA downstream 259102 8025491 ~ 8025898 (+) True G28800
CI01000004_07759670_07760529.mRNA mRNA upstream 4566 7759618 ~ 7760997 (+) False CI01000004_07759670_07760529
CI01000004_07712175_07712384.mRNA mRNA upstream 53161 7712175 ~ 7712402 (+) True CI01000004_07712175_07712384
CI01000004_07686845_07692184.mRNA mRNA upstream 72481 7686018 ~ 7693082 (+) True CI01000004_07686845_07692184
CI01000004_07654234_07655677.mRNA mRNA upstream 109782 7654234 ~ 7655781 (+) False CI01000004_07654234_07655677
CI01000004_07642418_07645369.mRNA mRNA upstream 119604 7642361 ~ 7645959 (+) False CI01000004_07642418_07645369
CI01000004_07775338_07780352.mRNA mRNA downstream 8853 7775242 ~ 7781318 (+) True CI01000004_07775338_07780352
CI01000004_07823292_07824588.mRNA mRNA downstream 56447 7822836 ~ 7826203 (+) True CI01000004_07823292_07824588
CI01000004_07843003_07860951.mRNA mRNA downstream 76614 7843003 ~ 7862424 (+) True CI01000004_07843003_07860951
CI01000004_07868939_07899539.mRNA mRNA downstream 102231 7868620 ~ 7900206 (+) True CI01000004_07868939_07899539
CI01000004_07903583_07906667.mRNA mRNA downstream 137194 7903583 ~ 7906670 (+) True CI01000004_07903583_07906667
TU32454 other upstream 109180 7654772 ~ 7654879 (+) True G28706
TU32079 other upstream 1191142 6572819 ~ 6574421 (+) True G28354
TU32005 other upstream 1263476 6470028 ~ 6502087 (+) True G28302
TU31830 other upstream 2032562 5732589 ~ 5733001 (+) True G28165
TU31418 other upstream 2391760 5372825 ~ 5373803 (+) True G27805
TU32590 other downstream 667316 8439958 ~ 8451227 (+) True G28818
TU32637 other downstream 832846 8599235 ~ 8599603 (+) True G28859
TU32792 other downstream 1210049 8976438 ~ 8980984 (+) False CI01000004_08976512_08980033
TU32793 other downstream 1210049 8976438 ~ 8980984 (+) True CI01000004_08976512_08980033
TU34813 other downstream 2730987 10497376 ~ 10497788 (+) True G30797

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU420453 True 6982 TUCP 0.46 1 CI01000163 111013 ~ 117994 (-)
striped catfish (Pangasianodon hypophthalmus) TU420453 True 6682 lncRNA 0.38 2 NC_047618.1 14067786 ~ 14081396 (-)