RNA id: TCONS_00030951


Basic Information

Item Value
RNA id TCONS_00030951
length 2975
RNA type mRNA
GC content 0.50
exon number 21
gene id XLOC_015476
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 26479676 ~ 26495044 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCGGATCGCCCTTTAGACTGGTGGTGGAGACACGTAGCTGTCTTGACAGATGCCAGTATCCGCGAGAAAGCTCTGGCGGGAGTAACAAAGCTTTACTGTCTCTAAACCTTTGTTACGCTGCTCTTTTTCTATCACGTCGGATTCCAGTAAAAGCGGACAAACAGGGAAAGCGGATGAGTGAGTGTAATGCTCGCTGACGCTCAGTGTTGTTGACACATCCTCGGCTAGCTCTCCGGCTAGCGCTCCCAAAACTTGAGGAGGAGAAATGTCTCCGGACGACAACCCTCACACCCTCCTGGGCAGGATACGCTTCTTAAACAGGTGTATAGAGTGTTTCCGAAAGAGCGAACCTCTGCCGGAGTCCCTGTGTTATGTGGCGAAGGAGGTTTGCTATAAGATATGTAAGGACTCGTCTTCGGGCTCCACTTCCGCGTCCTCCTCTACAGCGGGCAACTCGGGTGGCAAGAGTGTGGTGTCGGTGTGGGACAGCCCGCACCAGGCGCCACACAAGAAATCGTGCAGATGTAACATCGAGCCCAAAAAAGGGACGTGCATACGGACGACAGGGGAGGAGTACTGCAACAGCCACGGCCTGTGGGTCAAAATAAACAAGGAGCAGCTGGAGGAGTATCGGGCAGGTGTGGACATTGAGGAGGGCTGGATCCTGGTCTGCAAACACACTGAAGGAGGCGACAGACTCGTCCCGGTCGAGTCTGCTGACACTATCAGCCGGCAACAGCAACTCTTCGGATATGACCACAAGCCTTGTAATAGGTGGGAGCAAGTGGTGGATGTGGAGAACTCCTTACACATGGGTGCCAAACCCAAGGTGGCAGAGGCGGATGAGGCTGCTGTTCGAAAGTTGAGGCAAGTGCCTCCGACATGGACGTTTGAATGTGACGAGGACCTCGTGCACTACTTCTATGACCACATTGGAAAGGAGGATGAAAATCTTGGCAGTGTGAAGCAATGTGTGACCAGTATTGACGTGTCTTCTAGTTCGGAGGACCCTAGTGGTGGAGCAAGCTGTCTGACAGATGGAGACACGGAGACGTACTGGGAGAGCGATGGCATGCAGGGACAGCACTGGATCCGTCTGCACATGAGGAGAGGCACTGTGGTCAACAAACTGATATTAACAGTGGACTCAACAGATGACAACTACATGCCCAAAAGAGTGACCGTGTACGGTGGAGAGGGGGATAATCTCAAGAAATACAGTGATGTAACCATTGACGAcACCTTGATAGGAGAGGTGTGTGTTCTGGAGGACATGACATCACATTTACCAGTTATAGAGGTCAGGATTGAGGAATGCAGAGatgAGGGAATCGACGTACGGATCAGGGGTCTAAAGATCAAATCGTCCTGCGAACGTGACTTGGGCCTGAATGCAGATGTGTTCCAATCTCCCAATCTAGTGCGCTATCCGAGATTGGAGGGCACACCACCTGATGTCCTCTACCGACGTGCACTGGTAATTCAAAGGTTCATCACACTTCTGGACAGTCTATTGCCTCATATGGTGCCTGCATGGGACTACAGTCTGGGAACATTCAACCAGATCAAAAGCATAAAGCAGTTCCTGCTGTTGTCCAAGCGTCGCTCTGCTCTCATCACCCAGTGCCTGAAGGACTCCGAGACCAGTAAGCCTAACTTCATGCCCCGCCTTTACATCAACCGTCGCCTTGCCATGGAGCACCGGGACAATCCCACTCTGGATGTCACAtgcaaaaatgctgttttaactCAGGTTTATGAGGGTCTGAAACCATCTGACAAATATGAAAAGACTCTGGACTACAGgTGGTCAGCGCGATATGACCAGTGGTGGGAGTGTAAATTCATTGCAGAAGGCATAATCGATCAAGGCGGAGGGTTTCGAGACAGCCTGGCAGACATGTCTGAAGAGCTCTGTCCCAGTTCGTCAGAGTGTCCTTTGCCTCTACCATTCTTCACTCGCACATCTAACCAGGGAGCTGGAGAAGCCAGAGACTTCTATGTGCCAAATCCTTCATGCCGAGAATTCAACAAGTTTGAGTGGATTGGGCAGCTAATGGGTGCAGCTCTTCGTGGAAAAGACTTTCTGGTTCTGGCTTTACCAGGGCTGGTGTGGAAGCAGCTGATTGGAGAAGCGGTCAGCTGGACTAAAGACTTCCCTGCTGTAGATTCAGTTTTAGTGAAGCTGCTGGAGGCAATGGACCACATGGACAAAGAGACGTTTGACTTTAAGTTTGGCCAGGAGCTGGTGTACACCACACCTCTGAGCGACGGGCGGCTGGTAGAGCTCATTCCTGGAGGAAGCGGAGTGGTGGTTCGATATGAGGATCGCGTAGAGTTCATTCGCCTCGTACAGAAAGCAAGACTAGAAGAGAACCGAGAACAGATATCTGCCATGCAGGCAGGATTGGTGAAAGTGGTGCCACAAGCTGTGCTTGATCTCCTGACATGGCAGGAAGTAGAGAAGAAAGTGTGTGGAGACCCAGAGATCACAGTGGAGGCCCTTAAACGCCTCACACGATATGAAGACTTGGAGCAAACAGATGTCAGAGTGCAGTACTTATGGGAAGCGCTGATGAACTTCACCAATGAGGATCGTAGCAGGTTTTTGAGGTTTGTGACTGGCAGAAGTCGACTTCCTGCACCGATCTACATCTTCCCAGACAAACAAGGGTCTGAAACTGAAGATGCACTTCCTCAATCTTCCACATGTTCCAGCACCCTTTATCTGCCCAAATACCCAAGTGCTAAAGTTTGTGAAGAGAAGCTTCGCTATGCTGCATATAACTGTGTGGCCATTGACACAGACATGAGCCCATGGGAGGAGTGATTGCAACTGATTTTGCCATGTTTACCAATTTTACACACAGAATTTTGGCATAAATGGACTGTAGCCTTCAGCATCGTGCACATGACCATGTCTACACTATTGCCAATTACAtctgtacagtataaataaatatgttatacACAA

Function

GO:

id name namespace
GO:0016740 transferase activity molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-031118-179 Predicted to enable ubiquitin-protein transferase activity. Is expressed in hatching gland; notochord; and polster. Orthologous to human HECTD3 (HECT domain E3 ubiquitin protein ligase 3).

Ensembl:

ensembl_id ENSDART00000144837

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030948 lncRNA upstream 188986 26289302 ~ 26290690 (+) True XLOC_015474
TCONS_00033544 lncRNA upstream 312257 26166578 ~ 26167419 (+) True XLOC_015470
TCONS_00030930 lncRNA upstream 642844 25834095 ~ 25836832 (+) True XLOC_015465
TCONS_00030924 lncRNA upstream 1097335 25315658 ~ 25382341 (+) False XLOC_015463
TCONS_00030918 lncRNA upstream 1341887 25130523 ~ 25137789 (+) True XLOC_015461
TCONS_00030956 lncRNA downstream 3487 26498531 ~ 26501306 (+) False XLOC_015477
TCONS_00033545 lncRNA downstream 3487 26498531 ~ 26501647 (+) False XLOC_015477
TCONS_00033546 lncRNA downstream 3490 26498534 ~ 26501647 (+) False XLOC_015477
TCONS_00033547 lncRNA downstream 3517 26498561 ~ 26501647 (+) False XLOC_015477
TCONS_00033548 lncRNA downstream 3518 26498562 ~ 26501647 (+) False XLOC_015477
TCONS_00030949 mRNA upstream 35173 26303627 ~ 26444503 (+) True XLOC_015475
TCONS_00030947 mRNA upstream 179057 26288301 ~ 26300619 (+) False XLOC_015474
TCONS_00030945 mRNA upstream 195431 26240631 ~ 26284245 (+) True XLOC_015472
TCONS_00030943 mRNA upstream 195466 26237322 ~ 26284210 (+) False XLOC_015472
TCONS_00030955 mRNA downstream 3402 26498446 ~ 26501868 (+) False XLOC_015477
TCONS_00030964 mRNA downstream 109729 26604773 ~ 26611033 (+) True XLOC_015480
TCONS_00030965 mRNA downstream 152428 26647472 ~ 26653148 (+) False XLOC_015481
TCONS_00030967 mRNA downstream 152502 26647546 ~ 26649283 (+) True XLOC_015481
TCONS_00030968 mRNA downstream 160700 26655744 ~ 26680084 (+) False XLOC_015482
TCONS_00030946 other upstream 192171 26286465 ~ 26287505 (+) True XLOC_015473
TCONS_00030940 other upstream 440070 26034175 ~ 26039606 (+) True XLOC_015468
TCONS_00030908 other upstream 1633677 24842587 ~ 24845999 (+) True XLOC_015452
TCONS_00030897 other upstream 1938911 24540047 ~ 24540765 (+) False XLOC_015445
TCONS_00030957 other downstream 3490 26498534 ~ 26501294 (+) False XLOC_015477
TCONS_00030958 other downstream 3517 26498561 ~ 26501275 (+) False XLOC_015477
TCONS_00030959 other downstream 3518 26498562 ~ 26501305 (+) False XLOC_015477
TCONS_00030960 other downstream 4605 26499649 ~ 26499754 (+) False XLOC_015477
TCONS_00030962 other downstream 5989 26501033 ~ 26501103 (+) False XLOC_015477

Expression Profile

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