RNA id: TCONS_00030932


Basic Information

Item Value
RNA id TCONS_00030932
length 814
RNA type mRNA
GC content 0.46
exon number 5
gene id XLOC_015466
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 25839193 ~ 25845337 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAATCGGGCAACTCCGTAGCGTTAGTTCCGGTTAACTTTGTGTGCCGCTGGAAAAAACTTCTTCGATAACCCATCATGGCTGATCTGGATACTGATTTCACCAGTGGAGATGCTGGAGCTTCCCTGACCTTTCCCATGCAGTGCAGTGCCCTGCGGAAGAACGGCTTTGTGGTGCTCAAGGGACGTCCATGCAAAATTGTGGAGATGTCTACCTCCAAGACTGGCAAGCATGGACATGCCAAGGTGCACATGGTTGGAATTGACATATTTACTGGAAAGAAAAATGAAGATATCTGTCCCTCCACCCACAACATGGACGTTCCTAACATCAAGAGACAGGATTACCAATTGGTTGGCATTATCGATGGTTACCTTTCCCTTATGAAGGACAATGGAGACTTGCGTGATGACCTCAAGCTGCCTGAAGGCGATCTGGGCAAAGAAATAGAGAGCAAATTTGAATCTGGAGATGAATTTCTGGTCTCTGTTTTGGCTGCCATGGGGGAAGAGTGTCCCATCGCCATCAAGCCCATGAGCTCATAATGAACCGAAGCTGACCAGCTGGTTGAGTGAGGGCCTCCATAccacaaatattacattttagttcttaaaaaaacaaaaagtcaccAAAGCCACAGCCTTCACACACACCACCCAGAATTGGTTCTGTTAAACAGTAAAGATGCTGGACCTTTTGACCCGTCTCATGAGGTTTTGTCTAATCAGCATAATTCCACATCACCAAGGGTTTCCTGCACGCTTGTTATTTTGCCCCCTGTTCATTCCATTTTCATTATTCCAATGCACTTTTA

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0045901 positive regulation of translational elongation biological_process
GO:0045905 positive regulation of translational termination biological_process
GO:0043022 ribosome binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003746 translation elongation factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2405 Predicted to enable translation elongation factor activity. Predicted to be involved in positive regulation of translational elongation. Predicted to act upstream of or within several processes, including mRNA transport; positive regulation of translational termination; and translational elongation. Predicted to be located in endoplasmic reticulum membrane and nucleus. Predicted to be part of nuclear pore. Orthologous to human EIF5A2 (eukaryotic translation initiation factor 5A2).

Ensembl:

ensembl_id ENSDART00000134077

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030930 lncRNA upstream 2818 25834095 ~ 25836832 (+) True XLOC_015465
TCONS_00030924 lncRNA upstream 457309 25315658 ~ 25382341 (+) False XLOC_015463
TCONS_00030918 lncRNA upstream 701861 25130523 ~ 25137789 (+) True XLOC_015461
TCONS_00033263 lncRNA upstream 911896 24912293 ~ 24927754 (+) True XLOC_015456
TCONS_00033543 lncRNA upstream 933035 24903666 ~ 24906615 (+) True XLOC_015455
TCONS_00033544 lncRNA downstream 323011 26166578 ~ 26167419 (+) True XLOC_015470
TCONS_00030948 lncRNA downstream 445735 26289302 ~ 26290690 (+) True XLOC_015474
TCONS_00030952 lncRNA downstream 639330 26482897 ~ 26483391 (+) False XLOC_015476
TCONS_00030953 lncRNA downstream 648192 26491759 ~ 26494145 (+) False XLOC_015476
TCONS_00030954 lncRNA downstream 650733 26494300 ~ 26495044 (+) True XLOC_015476
TCONS_00030929 mRNA upstream 1664 25816843 ~ 25837986 (+) False XLOC_015465
TCONS_00030927 mRNA upstream 22423 25657958 ~ 25817227 (+) False XLOC_015465
TCONS_00030928 mRNA upstream 23161 25658112 ~ 25816489 (+) False XLOC_015465
TCONS_00030926 mRNA upstream 207560 25560556 ~ 25632090 (+) True XLOC_015464
TCONS_00030925 mRNA upstream 296188 25378457 ~ 25543462 (+) True XLOC_015463
TCONS_00030936 mRNA downstream 16777 25860344 ~ 25988465 (+) False XLOC_015467
TCONS_00030937 mRNA downstream 24837 25868404 ~ 25947635 (+) False XLOC_015467
TCONS_00030938 mRNA downstream 24837 25868404 ~ 25988465 (+) False XLOC_015467
TCONS_00030939 mRNA downstream 86052 25929619 ~ 25990784 (+) True XLOC_015467
TCONS_00030941 mRNA downstream 216961 26060528 ~ 26156784 (+) True XLOC_015469
TCONS_00030908 other upstream 993651 24842587 ~ 24845999 (+) True XLOC_015452
TCONS_00030897 other upstream 1298885 24540047 ~ 24540765 (+) False XLOC_015445
TCONS_00030898 other upstream 1298925 24540209 ~ 24540725 (+) True XLOC_015445
TCONS_00030891 other upstream 1341809 24484289 ~ 24497841 (+) True XLOC_015443
TCONS_00030885 other upstream 1488610 24348589 ~ 24351040 (+) True XLOC_015440
TCONS_00030940 other downstream 190608 26034175 ~ 26039606 (+) True XLOC_015468
TCONS_00030946 other downstream 442898 26286465 ~ 26287505 (+) True XLOC_015473
TCONS_00030957 other downstream 654967 26498534 ~ 26501294 (+) False XLOC_015477
TCONS_00030958 other downstream 654994 26498561 ~ 26501275 (+) False XLOC_015477
TCONS_00030959 other downstream 654995 26498562 ~ 26501305 (+) False XLOC_015477

Expression Profile

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