RNA id: TCONS_00030927


Basic Information

Item Value
RNA id TCONS_00030927
length 6996
RNA type mRNA
GC content 0.46
exon number 32
gene id XLOC_015465
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 25657958 ~ 25837986 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAATGTTGGCAAGATCCTTTGCAGCAGTTTCAGCTCTACCGTGGAACCATCAAGTGGGCGGTACCAGTGACACCAGCTCCGCCCATTTTGCTGGCCACTCCCACACGTCTGATTGATGCTGCTCTCAAGCCAAGCGGCATTGAGATTTCAGCTACAGTGTGAGAGAGTGTAAGATGGGCAGCTCCTGCTGAAAATAACATGCAGTCCTCAGAGCGCACGGTGTTTTTTGTCGCCAGGGTGAAAATCTAACTGAGGTCTAGCGAAAGCATCGGTGGAATTCACTGTTAAAAGAGGGATTGTACCAGAAGCAAGAGCGAGCGGAGAGAGGAGATTTGAACGCGCTGCTGCGGGAGACCAGCGGACGACTGACTGAGAGGTCTATTCAACAACATTTCTTTGTTTCTCCGTCTAACTCCGGTTTTTTCGTCTTTAATATGGCGAGCGATTCCCCGGCTCGGAGTCTGGATGAAATAGACCTCTCCACTTTAAGGgaCCCTGCAGGAATTTTTGAGCTGGTGGAGCTGGTGGGCAATGGCACGTATGGTCAGGTGTATAAGGGCCGACATGTCAAAACAGGTCAACTGGCTGCTATCAAGTGCATGGATGTCACAGGGgaggaagaggaggagatcAAAGCGGAGATCAACATGTTGAAGAAATACTCTCACCACAGGAACATCGCCACCTACTATGGTGCCTTTATTAAAAAGAACCCACCCGGCGTGGACGACCAGCTGTGGCTGGTGATGGAGTTTTGTGGCGCAGGCTCAGTGACGGACCTGATCAAGAACACCAAAGGAAACTCGTTGAAGGAAGACTGGACTGCCTACATTAGCAGAGAGATCCTCAGGGGGCTCACTCATCTTCACCAACACAAAGTCATCCACAGAGACATCAAAGGCCAGAACGTGCTGCTAACAGAGAACGCTGAGGTCAAACTAGTGGACTTCGGTGTGAGCGCACAGCTGGACCGAACCGTCAGCCGCAGGAACACTTTCATCGGCACCCCTTATTGGATGGCACCAGAGGTCATTGCTTGTGATGAGAATCCTGACGCCACATATGACTATAAGAGTGACCTGTGGTCTTTGGGAATCACGGCCCTTGAAATGGCTGAAGGAGCTCCACCCCTTTGTGAATTGCACCCAATGAGAGCCCTGTTTCTGATCCCCAGAAATGCTCCTCCCAGGCTCAAGTCCAAGAAGTGGACTAAGAGATTCCACTCGTTCATCGAAAGCTGTTTGGTAAAGAACCACAACATGAGGCCTGGTACAGATCAGCTCCTCAAACACCCCTTTATCCGGGACATGGCGAACGAGAGAACGATCCGCATCCAGTTGAAGGATCACATCGATCGCACCAGGAAGAAGAGAGGAGAGAGAGATGAGACGGAGTATGAGTACAGCGGGAGTGAAGAGGAGGAAGAGGCCATGCTTGAGATTGGAGAACCCAGCTCCATTATCAACATACCCGGCGAGTCGACTCTACGGCGGGATTTCCTGCGCCTGCAGGTGGCCAATAAGGAGCGTTCAGACGCCCTGCGTAGACAACAGCTTGAGCAGCAGCAGAACGAGGGACACAAACATCAACTGCTGGCAGAGAGGCAGAAACGCATCGAGGAACAGAAAGAACAGAGGCGCCGATTAGAAGAGCAACAGCGACGGGAACGTGAAGCAAGAAAACAGCAGGAGCAAAGACATCGCTATGAGGAGCTCCGGCGAGAGGAGGAGAGGAGACAGGCTGAAAGAGAGCAGGAGTATATCCGTCGTCAGTTGGAGGAGGAACAGAGACAACTCGAGATCCTACAACAACAGCTCTTGCAAGAGCAGGCGCTCCTACTGGAGTATAAACGTAAACAGGTGGAGGAACAAAGACAGGCGGATAGATTGCAGAGGCAGCTCCAGCAAGAAAGAGCTTACCTCGTCTCTCTccaacaacagcaacagcagcaacaacaagaCTCCAGACCTGAAGAGAAGAAGCAACTTTACCATTACAAAGATGCTGTCAACCCCAGCGACAAACCAGCGTGGGCTAAAAAGGTTGAGGAGCGATCTAAACTGAACCGCCAGAGCTCTCCTGCCCTACAGCATAAAGTGGCCAATCGTATCTCTGACCCTTCCCTCCCGCCTCGCTCTGAGTCCTTCAGCAGTGGAGGAATGCAGCCAGCACGCACCCCTCCTATGCACCGCCCTGTGGAGCCCCAGATGGCTCATTTGGTTCCAGTGAGGTCCCATAGCTCCTCTATGTCAGTCTCGCAGTCTTTGCATGATCAATCTGCAAAGGGTGTTTCAGCCTTCCAGGAAAGCCTGGTGTCCAATCGACCAGAGATGCCTCGACAGAACTCCGACCCGACTTCAGAGATGCCCCCTCCTGCCCCTCGCATGGCCAGCCATGAGGAAAAACCTGACCGCAGTTCCCCCTGGCTGAGGGAAGACGCCGTTCCTCCCAAGttgTCCGGTACTACCCAGGTGCCCCAGAGGACCACTTCTATCTCCCCTGCTCTTGCTAGGAAAAACTCTCCTGGAAACGGAGAGTCCAGTGGAGGGGGGCGGTCGGCCTCTCAGCTCATTCGCACCAGTAATCCAGACCTGAGGAGGACAGAGTTGTCTCTGGATGTGGCCCTGCAGAGAACCAGCAGCAACAGCTCCTCCAGCTCCAGCACACCCAGCTCTCAGGGTGGATCCCAGCCTGGATCCAGTGAGAGGAACCAGCCAAGAGGATCTGGTAAATCAGAGGGATCTCCAGTGGCATTACAGGAAACCTCCAAGCCCATTCAGGAGGAAGGCAGAGAGCTAAGCAAACCCAGTCGGCCTGCAGATCTGACTGCCCTGGCTAAAGAACTGAGGGAGCTGCGAATAGATGAGGTCAGTCGACCCCCTCTTAAACTCACAGACTACTCCTCTTCTAGTGAGGACTCTGATAGCAGTGAGGATGAGGATGGTACGGTGGGACACGACGGCACTGTGTCAGTCAGTGACATACCCAGGATCATGCCATCCGTTCAAGGAAATAATGAGTCGTTCACGAGCAGCCATGATGATTCCCTCACTGACTCCTACAATGATGAGTCTAAAGATGGGACACTGAGGATGCGAGAGAACAATGAGAGGCAACGCTTAGGCCATGGCGAGAGCAATGGCTTTGCAGGCCATGGAAACCTACCAGACCTCCTGCAGCAGAGCCACTCTCCATCCGGAACTCCAACAGGCCTCAATTCCCAAGACCTGGACTCTATGGATGagTTTGGTCTTGGCGGTGGTTCGAAAGCTTCTTTCACTCCTTTTGTGGACCCACGAGTGTATCAAACCTCCCCCACAGACGACAACGATGAGAGCTCAGCAGCCGCTATGTTTGCGAATGAGCTGTTGCGTCAAGAGCAGGCCAAACTGAATGAGGCCCGCAAGATCTCTGTGGTGAACGTCAACCCCACCAACATCAGACCTCACAGCGACACGCCAGAGATCCGCAAATACAAAAAACGCTTTAACTCCGAGATCTTGTGTGCTGCTCTATGGGGTGTTAACCTCTTGGTGGGCACTGAAAATGGTCTGATGCTGCTGGATCGTAGCGGTCAGGGCAAGGTTTATAACCTCATCACCCGCAGACGCTTCCAACAGATGGATGTGCTGGAGGGTCTAAATGTCCTGGTCACCATATCAGggaaaaaaaataagcTCCGTGTGTACTACTTGTCATGGCTAAGAAACCGAATACTGCACAATGACCCGGAGGTGGAGAAGAAGCAGGGCTGGATCACTGTTGGTGAACTCGAAGGCTGCATCCACTATAAAGTTGTGAAATACGAGAGAATCAAATTCCTGGTGATTGCACTGAAGAACTCGGTAGAGATTTACGCATGGGCCCCCAAGCCGTACCATAAATTCATGGCTTTCAAGTCGTTCACAGAGCTGCAGCACAGACCTCAGCTGGTGGACCTCACAGTAGAAGAGGGTCAGAGGTTAAAGGTCATCTACGGCTCTAGTGTGGGCTTTCACGTCATCGATGTGGATTCCGGAAGCCCCTACGACATCTACATACCGTCACATATTCAGAGCACTGTGACTCCTCATGCCATCGTGGTGCTTCCGAAGACTGATGGCATGGAGATGCTGCTGTGTTATGAAGATGAGGGCGTTTATGTCAATACCTACGGCAGAATCACCAAGGACGTTGTCTTGCAGTGGGGAGAGATGCCCACCTCTGTTGCTTATATTCATTCCAACCAGATCATGGGCTGGGGAGAGAAAGCCATTGAGATCCGCTCTGTGGAAACTGGTCACCTGGATGGGGTTTTCATGCACAAGAGAGCTCAGAGACTCAAGTTCTTGTGTGAGAGGAACGACAAGGTGTTCTTCGCCTCAGTGCGGTCAGGTGGCAGCAGTCAAGTGTTCTTCATGACCCTGAATAGGAACTCTCTGATGAACTGGTGAAGCTCCTGCACAAGCAACACTGTGGAGTCTTTCTCCTCGTCAGCATTGCATCTGTGAGCGCACGGTACATTGACACTTTGGTCTGAAAAAGATTAACAAATTATTATAGAGACTCTGGAGGATCGAACCCGGAGACGTGGGTCTGTCCTGTAAGCAGAGAGCACTGGCTCATGGAGGTGCTGTATCTGACGTCACCTGCAGTGGCGCGCAGCTCCCAAAAGAGGGCGCCGATTAACTTGAACTCGGTTTTAGACCTTATTTGTGGCCTCTggtaaaaaaagttgaaaaagccTGTCCTTTTTAGGATCCTCCCCGTTTCCGTTTCCAATCCCTGGTTACCCCTATTGGCTTTCAGTTTCCTGCTGAGTTTTTAGTCAATTGCATGATTGTAAAGAAATGGGCGGTATTTAAAACGTGAGGATAACATTAGCAAAGCACTCAGGCTAAGACCAAGCTTTAGTCTCTTGATGTTTCACTTTAAGATATTGGCAAACATTTCTGCCACTTACACAAGTATCCGTGATGCccgttgattttatttttgtgtcCGGTTTCTGACGTacttaaaagaaacaaacaaacactggtGCTCATTTGTATATTGTCGACAAGatccatatactgtacatttatcCAAAGTACTGTATTTCGAAGTATGGTTCAGTTTGTTTTATAGCTTTGAGGTCGGAAAGCTGATTATGATTGGATCTTTAAGTTGcgaaccatgttttttttttttttaacgtctTTTTTGGTCCTTTTTTGGAATGTTTGAAACAGGAACATGAACGTTACCTGAGTGAAATCCACAGTAGCCACACGCTTCCCTTCACTGGTTGCATGTTTTGTAGACACTGGATGTGTATGTCGGAGCAACATGATATCTGAAATcaagaaatgaaaaaataataaaaaataaggataAAAGCACCTGTATTTCAGTGACCATTGAGAATTGATGAGGACTTCTGTTTTATTCTAGTGCCGAGCACAAATTTAAACGTGAAATCAAGCATTAGAAACACacaattttctattttttttgtttctaataCTTATAATTTGTAGCCTGTAAGTCTCTTTTTTTGATCACTGTTTGCTTGCAGttatattttgcagtgtttaaTCAGTCAAATTAACCCGGGGCTTAAAACATTCCACAATGGGAAAAGAGTCTTTACAATGACAGTGATGCTCTAAATTCatgatttataaatgtaaaagaaatcAACTCTTTCCCTCTTGGTACAAAACTACAACAGATATTAAACACAATGTATTGTTCATtagattattagtattattatatttttattgctttttttttgtatgtttgcctGCTGGGCTCTCAGTTGGACGCTTTAGATGTTCTCAAAGTCACTTGATGTTTGCACACtatatagatatttatatttctttcacATCTCTTACATagcagaagaagatattttaacgGTGAGGGAATGAGAGGTTTTTAGCAATAATGTCCTGCtgatgtatgtatgcgtgtatgtatgcTGTGTGAAACACTGTGTTCAGCCAGTGAAGATCCTCACTGCGCTCTTTTAATTGACTACATGATTTGACACTCAAGAATGGTTACTTAATGTTTCTGTCTTAATACGTTTTTAATGATCGTCGTTCTTTCCGAAGCTCTAAACAAGATTTTCGGTTCTTTTACAGTGATACAAGCACTATGTCCTcccttttcttttcctttctctcccttttttttaattattattgttggtgttgttgtttttttggtttgtttttaattttattttatgataagaaaaaagaataaaacaaataagtaccTTTTTTGACTGGTGTTGGTGTCCCTCCTTCTGTTTACGCAGAGCTCGTGAAATCTGCAGTATCTCTGAGAACTTTGCTCTGATAGATGTAATACATTAACTCTTGGTGTTCAAGCACATACAAACAAAATCttttaacattgtttaaaaaaaaatcagtgctgCCGACACAAAAcatcattaatatattaaaatgatataaGACATATCGATCATATTCAAAGCAGTAAATAATAATCTACAGGAAGATGGTTTTCCTGAAGCTCTCTATAAACAGCGCTAAAACATAATTAGCAGGGCAGAAGGTCTGATCCCAGCACACATGTTCGGCATGTTCTCACAGTGACAGGATTGATCATTTACTGAGGATTGGGAAAGCGGCAGAGAACCTTGGAGCCACTATTAATGTCCAGGAGCGCCGTTTGCTGGCACTTCATGCAAAATGGAGAAGGTAAATTGATTTTGTTTGCttgaattcaaatgaattatgaATTGCTGTTTAGTTCGAGTTTCAATTAGCAGTAGGCTGATCATGTAAATGATGTGTCTCATTGATATTCGTTTAAGCTTTGCATGTTAAATTTACTCTGGTATGAATGAAAGATAGTGATTGCGGTTGTTATTCACTCTGATTACATGGTGATACtaggtttattattaacattGCTGAGATTTGCCATAATAAGCAGCCATTTGGTTGTAAATCTAAAAATAATGAACTGCAAAATTGACCGGAGTATAG

Function

GO:

id name namespace
GO:0048812 neuron projection morphogenesis biological_process
GO:0023014 signal transduction by protein phosphorylation biological_process
GO:0032147 activation of protein kinase activity biological_process
GO:0000165 MAPK cascade biological_process
GO:0006468 protein phosphorylation biological_process
GO:0031098 stress-activated protein kinase signaling cascade biological_process
GO:0007369 gastrulation biological_process
GO:0016310 phosphorylation biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0008360 regulation of cell shape biological_process
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3767 Predicted to enable protein serine/threonine kinase activity. Acts upstream of or within convergent extension involved in gastrulation and regulation of cell shape. Predicted to be active in cytoplasm. Is expressed in nervous system and neural tube. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human TNIK (TRAF2 and NCK interacting kinase).

Ensembl:

ensembl_id ENSDART00000161407

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030924 lncRNA upstream 275617 25315658 ~ 25382341 (+) False XLOC_015463
TCONS_00030918 lncRNA upstream 520169 25130523 ~ 25137789 (+) True XLOC_015461
TCONS_00033263 lncRNA upstream 730204 24912293 ~ 24927754 (+) True XLOC_015456
TCONS_00033543 lncRNA upstream 751343 24903666 ~ 24906615 (+) True XLOC_015455
TCONS_00030903 lncRNA upstream 893370 24762638 ~ 24764588 (+) True XLOC_015450
TCONS_00030930 lncRNA downstream 16868 25834095 ~ 25836832 (+) True XLOC_015465
TCONS_00033544 lncRNA downstream 349351 26166578 ~ 26167419 (+) True XLOC_015470
TCONS_00030948 lncRNA downstream 472075 26289302 ~ 26290690 (+) True XLOC_015474
TCONS_00030952 lncRNA downstream 665670 26482897 ~ 26483391 (+) False XLOC_015476
TCONS_00030953 lncRNA downstream 674532 26491759 ~ 26494145 (+) False XLOC_015476
TCONS_00030926 mRNA upstream 25868 25560556 ~ 25632090 (+) True XLOC_015464
TCONS_00030923 mRNA upstream 113108 25315591 ~ 25544850 (+) False XLOC_015463
TCONS_00030925 mRNA upstream 114496 25378457 ~ 25543462 (+) True XLOC_015463
TCONS_00030921 mRNA upstream 366777 25245153 ~ 25291181 (+) False XLOC_015462
TCONS_00030922 mRNA upstream 366777 25278107 ~ 25291181 (+) True XLOC_015462
TCONS_00030931 mRNA downstream 21966 25839193 ~ 25845337 (+) False XLOC_015466
TCONS_00030932 mRNA downstream 22423 25839650 ~ 25843567 (+) False XLOC_015466
TCONS_00030933 mRNA downstream 22471 25839698 ~ 25843573 (+) False XLOC_015466
TCONS_00030934 mRNA downstream 22713 25839940 ~ 25841085 (+) False XLOC_015466
TCONS_00030935 mRNA downstream 23236 25840463 ~ 25843298 (+) True XLOC_015466
TCONS_00030908 other upstream 811959 24842587 ~ 24845999 (+) True XLOC_015452
TCONS_00030897 other upstream 1117193 24540047 ~ 24540765 (+) False XLOC_015445
TCONS_00030898 other upstream 1117233 24540209 ~ 24540725 (+) True XLOC_015445
TCONS_00030891 other upstream 1160117 24484289 ~ 24497841 (+) True XLOC_015443
TCONS_00030885 other upstream 1306918 24348589 ~ 24351040 (+) True XLOC_015440
TCONS_00030940 other downstream 216948 26034175 ~ 26039606 (+) True XLOC_015468
TCONS_00030946 other downstream 469238 26286465 ~ 26287505 (+) True XLOC_015473
TCONS_00030957 other downstream 681307 26498534 ~ 26501294 (+) False XLOC_015477
TCONS_00030958 other downstream 681334 26498561 ~ 26501275 (+) False XLOC_015477
TCONS_00030959 other downstream 681335 26498562 ~ 26501305 (+) False XLOC_015477

Expression Profile

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