RNA id: TU68212


Basic Information

Item Value
RNA id TU68212
length 1706
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G54566
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 25347278 ~ 25348983 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

catttacaatcacctatacaaacaatacagttgtaaaatatattctgtacagGAAAccatatacacatatttaacaaGATTACTTGGTCTTCCAGaaatttcaaatgcattattattcaCATTGATGGCATTTCTCATAGGTTAAACATGTACCTTGccatcaaaaaaacaaaacaaaaataacagcttTGTGCAAATCAAGTTTAACGTTTTTTCAAGAACATGTGGATTACACACATCTCAGACATTACACAACTAGGCTGCAAGCAAACAGATAGCGGGCTTAAATGTTTTGCTAAATTGTGCAGCACGGCGATTCCTTTCATTGTACTCTGGATAACTGCAGTGCACTATGTTCTGGGATGGACAACAAATTATCACTTCTAGAAAGGAACTTTCCCATTCATACATGTAAACTACAAATTTCTGTTCTGTGTTAGATATTCCCTTTTACAATAAAACCGAATGCCATGTGATGAATACATTCTACACAGAGCATAGGTTAATCGTACAAGCTATGATCCAGGGCTGTCACAAGAAACCACTGAGGGGGAAAAGAAGTAAACCAAGGTCAACTGTGAAAGGTTTTTTCTTCACTAATTAACTACAGGAGGTCAAGGTAACCCTTTTGTTTTACTGACAAATATGAACCTCACTGTGTTGGATGCATTTTCTGTATAAATTCTGTAAAGAACAGAACAACGTATTTCATGGATATACGAGtgtaatatattcaaaaagagAATGCTCACATTTATGATCATCCCTTCTCACTTGTGAGAAccagaaatatgaaaaatgtcatTCAATACATTGCTTCCAAAATATTTATGGGTTTGGACATGGAGGAGGTTAAATCAGGGATTTGAACGGATTTAACGACCAGCTCTGAACTTGCTGGTGATTCAAAGAAACCTGCTGGATTTGTGCACCACTAATGTTGATCACCCTGAACTGTGATCCAATCAAAAGGTGACATGTTTATAGCAATAAACTCAGATCAGTGCCTTTAAAAAAGCATGGTGGAATAGCTGTTGATAAAGATgtggttattttaataaacGGATCACTTTCTGAAGAAATCTTGAACAGCAACGTCAACCTGACAGTTTATTTTAGTCAGTTACCTGTGCATCCCCAACTTGATCTGTGAAAACAAAGTTATATTCTGCCAGTCCATCACTAGGGCTCACTTGGAGCTATGAACTCCAGACCAATATCTATGCATAGAGAAAAAATAACTCTGTGTTGCtggaaatgtacaaataaattcaGTGTACAAACTACTATaggtatataaaaataaactccacCATATACTCCACCTATTGCCAAACACTCCACAATAGCACTGCTCTGATGTAGACTgtgcaacacatttataaagcaATCTAAATGTAGCAGAAAAGTGGTGGCAGATCCAGACGACCTTACAGTGCAACCCAATTTTAACcttaacatacatttttcaaaaggaaGACCATGACCTGTGTTTGTAATACAAGCTGAAACAAACTTCTTCAAACTCATTCCTAGAGAGCTATGGTCTGCGGTGTTACACTAGTATAAATTAGACTGAACTGACTGGAATGCAACATCACTGGTCTAGAAAAGGAAGCTTTCATGGATTCAACAAAACCTGAGTTAGCACGGTCATTTCAACAGAGTTAAACATAATCAAAAGCTGCAATCCAAGCAATGGAGGA

Function

GO:

id name namespace
GO:0006814 sodium ion transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68209 lncRNA upstream 38783 25308260 ~ 25308495 (+) True G54563
TU68188 lncRNA upstream 174414 25172001 ~ 25172864 (+) True G54547
TU68038 lncRNA upstream 560193 24783510 ~ 24787085 (+) True G54430
TU67939 lncRNA upstream 1068717 24277905 ~ 24278561 (+) True G54356
TU67901 lncRNA upstream 1181217 24165790 ~ 24166061 (+) True G54328
TU68232 lncRNA downstream 55687 25404670 ~ 25413822 (+) True G54580
TU68253 lncRNA downstream 140891 25489874 ~ 25493573 (+) True AMCG00009104
TU68263 lncRNA downstream 167390 25516373 ~ 25517909 (+) True G54608
TU68264 lncRNA downstream 172036 25521019 ~ 25521314 (+) True G54609
TU68374 lncRNA downstream 1058554 26407537 ~ 26407814 (+) True G54705
AMCG00009096 mRNA upstream 189727 25151798 ~ 25157551 (+) True AMCG00009096
AMCG00009097 mRNA upstream 309600 25032102 ~ 25037678 (+) True AMCG00009097
AMCG00009089 mRNA upstream 388642 24950775 ~ 24958636 (+) True AMCG00009089
AMCG00009088 mRNA upstream 429568 24898116 ~ 24917710 (+) True AMCG00009088
AMCG00009083 mRNA upstream 465336 24873573 ~ 24881942 (+) True AMCG00009083
AMCG00009104 mRNA downstream 140728 25489711 ~ 25493399 (+) False AMCG00009104
AMCG00009107 mRNA downstream 222345 25571328 ~ 25574564 (+) True AMCG00009107
AMCG00009108 mRNA downstream 235899 25584882 ~ 25587615 (+) True AMCG00009108
AMCG00009111 mRNA downstream 274814 25623797 ~ 25639855 (+) True AMCG00009111
AMCG00009109 mRNA downstream 318537 25667520 ~ 25674012 (+) True AMCG00009109
TU68059 other upstream 429415 24915029 ~ 24917863 (+) False AMCG00009088
TU68049 other upstream 530744 24812618 ~ 24816534 (+) True AMCG00009085
TU67814 other upstream 1371372 23883317 ~ 23975906 (+) True G54263
TU67408 other upstream 4053377 21292241 ~ 21293901 (+) True G53917
TU67406 other upstream 4071924 21274611 ~ 21275354 (+) True G53915
TU68288 other downstream 235909 25584892 ~ 25587610 (+) False AMCG00009108
TU68775 other downstream 2264600 27613583 ~ 27617378 (+) False AMCG00009164
TU69158 other downstream 3417471 28766454 ~ 28777621 (+) False AMCG00009204
TU69199 other downstream 3579909 28928892 ~ 29011768 (+) True AMCG00009207
TU69266 other downstream 3754657 29103640 ~ 29106908 (+) True AMCG00009208

Expression Profile