RNA id: AMCG00009088


Basic Information

Item Value
RNA id AMCG00009088
length 2342
RNA type mRNA
GC content 0.45
exon number 13
gene id AMCG00009088
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 24898116 ~ 24917863 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GttactgtttgtttattgcTATTTTTGGatgcactttaatttaaaagcacatttattatGAAATCGGTACTTCTATAGTATTATCCTAATATGAAAGCCTAAACCGGAAAACATCTCAAGTCAAGGTTTACAATAATGTCAGATCTGAGATATTGGTAGCTAGAAAAAGGCAAAGCTAGTATCTGTCTTACGGAGCTGCAACTATACCAGCGGTTCTAGCTAGTGCACCTATTattaagcttttgtttttctgtcgtGATTTGTTTCTTGTTCAGAAACCCTTTCGTTCGACCGTAAAACGTGTTTGTTTGGACATCCGTTTTATTTTCCACGCTAATATACATACCCTTGACACTTCCTGCAACACCGCTCTACATTTCACCTTGTAGTGCAGCATGGAGGGAGTGGGGGAGAACGACAGGGAGCAGCATAGCTCTGGTGGGCCCCAGCGGAGGAGGGAGCGGCAGGGCAAGTCTCCTAGGAGGCGGCGAGATGTGAAGAGGCCACAGCGGCAGCAGGAGGAAAAGGAGGAAAGAGAACGCCCATTGTTACCCAGGCAGCCAGTGATCTCTGAGCCCTCAACCCACAACTCGGAGTCTTCAGACTCTTCTGCGAAAAGAAGGGATGGGTGCAGAAGACCTCATTTTCTACATGGACCATATCCAGCAACACACTTTGGACCCAAAGCCTGCATATTACCTAACCCGACTTCAGTTATGCACATCCAGGATCCAGCCAGTCAGCGACTGACTTGGAGTAAGCCTCCCGTCAATGTGCTGGTCATTAAGAAGATCCGCGATGAGAGTCTGCTGGAGCCATTCAAACAACTCTGCAGGTTCCTGATAGAGGAAAAGCAGCTTGTGGTTTATGTGGAGAAGAAAGTGGAAGAGGATGCCACCCTCTCTAAGGACGAGGCATTTGGCTCCATCCGAAACCAGCTGTGCACTTTCAGAGAAGgttATGATGACATTTCGGATTGTATAGACCTGATTATCTGTCTAGGAGGGGATGGGACTCTGCTGTATGCTTCCTCTTTATTCCAGGGCAGTGTCCCCCCCGTCATGGCATTCCATCTGGGCTCTCTGGGGTTTCTCACGCCATTTAAATTTGAATCTTACAAGACAGAAGTCGCCAAAGTTTTTGAAGAGTTCAATGTTTACCGCCTGCAAGGGAATGCAGCAATTATCCTGCGCAGCCGTTTGAAAGTCAAGGTTGTGAAGGATATATCGCACGTGCAGGAGGCTGCCCAGCACTACAAGGCAGAGGAGAATGGGCTGGTGCCACATAGCCACATGGACAGTGAAGCTGGGAAGATCACTTTACAGTTACAGGTGCTCAATGAGGTGGTTGTTGACAGAGGCCCTTCTTCATACCTGTCCAACGTGGATTTGTATCTAGATGGCAGGCTGATCACGTCTGTGCAGGGAGACGGGGTGATCGTGTCCACGCCCACAGGCAGTACTGCATATGCGGCGGCAGCTGGAGCCTCCATGATCCACCCCAACATAATGTTGTCTCCCGGGGCCAGAAACACAGCTTGGGTGTCATTCGATGGGAGAAAGAGACAGGAGATTCAGCATGGTGACAGGTATACTCACATTAAAATCACAACATCCTGCTATCCCGTCCCCTCCATTTGTTGCCATGACCTGGTGTATGACTGGTTCGAGAGTCTAGCCGAGTGTCTGCACTGGAACATTCGCAAGAAGCAGACAAGACTTATGGATGTCACTGACTCCTCTGACACAGAGAACTGACACACCCAGAGGatgggaagggagggagggtaTTGtgtcacattcatttaaaacttcCAAACACAAGGTGCTTGAAAGGCATGCCAAATTTAAGCACATTATTGTTACGTATTGTTATTATAACTGTCACTGATTCAACAGGGCTTCCCATATTATTGTGCTGAGACAGACACTAAAGCACTAAACCAGTCCTATAGGAAAACATGCACTGGTCCCATCTTCTACTCCACAGTTGAAACATATACTCAGAGAGACAGAAGTCCAATTCTCATTTAAACCATTCttggaagacaaaacaaaaatgcccaTATACATGCATGTAGCAGTAATATCTGCTGGCTGTTCTTGCTATCTTCTTAAAGATGAACAGACTTGCTTTTCAATAAACAAGATGCTTCAATTTCTTCATCAGATATGATGCATCCAGGTAAATAAACATGATAACTatgttatgtatattatttgagATCTTTGCTCTTTAAGTTATTATaccatttattgaaatacaggGTATCAATATAGCATGTCCATATTTAAGTGTAAAGGATAGTAGTTTTAGAATTTAACAATTGCatcctttttaat

Function

GO:

id name namespace
GO:0006741 NADP biosynthetic process biological_process
GO:0019674 NAD metabolic process biological_process
GO:0003951 NAD+ kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68038 lncRNA upstream 111031 24783510 ~ 24787085 (+) True G54430
TU67939 lncRNA upstream 619555 24277905 ~ 24278561 (+) True G54356
TU67901 lncRNA upstream 732055 24165790 ~ 24166061 (+) True G54328
TU67815 lncRNA upstream 1003829 23890127 ~ 23894287 (+) True G54264
TU67787 lncRNA upstream 1233464 23664157 ~ 23664652 (+) True G54238
TU68188 lncRNA downstream 254291 25172001 ~ 25172864 (+) True G54547
TU68209 lncRNA downstream 390550 25308260 ~ 25308495 (+) True G54563
TU68212 lncRNA downstream 429568 25347278 ~ 25348983 (+) True G54566
TU68232 lncRNA downstream 486960 25404670 ~ 25413822 (+) True G54580
TU68253 lncRNA downstream 572164 25489874 ~ 25493573 (+) True AMCG00009104
AMCG00009083 mRNA upstream 16174 24873573 ~ 24881942 (+) True AMCG00009083
AMCG00009087 mRNA upstream 38886 24858013 ~ 24859230 (+) True AMCG00009087
AMCG00009084 mRNA upstream 53899 24818218 ~ 24844217 (+) True AMCG00009084
AMCG00009085 mRNA upstream 81594 24813179 ~ 24816522 (+) False AMCG00009085
AMCG00009081 mRNA upstream 117365 24762016 ~ 24780751 (+) True AMCG00009081
AMCG00009089 mRNA downstream 33065 24950775 ~ 24958636 (+) True AMCG00009089
AMCG00009097 mRNA downstream 114392 25032102 ~ 25037678 (+) True AMCG00009097
AMCG00009096 mRNA downstream 234088 25151798 ~ 25157551 (+) True AMCG00009096
AMCG00009104 mRNA downstream 572001 25489711 ~ 25493399 (+) False AMCG00009104
AMCG00009107 mRNA downstream 653618 25571328 ~ 25574564 (+) True AMCG00009107
TU68049 other upstream 81582 24812618 ~ 24816534 (+) True AMCG00009085
TU67814 other upstream 922210 23883317 ~ 23975906 (+) True G54263
TU67408 other upstream 3604215 21292241 ~ 21293901 (+) True G53917
TU67406 other upstream 3622762 21274611 ~ 21275354 (+) True G53915
TU67402 other upstream 3729541 21168231 ~ 21168575 (+) True G53911
TU68288 other downstream 667182 25584892 ~ 25587610 (+) False AMCG00009108
TU68775 other downstream 2695873 27613583 ~ 27617378 (+) False AMCG00009164
TU69158 other downstream 3848744 28766454 ~ 28777621 (+) False AMCG00009204
TU69199 other downstream 4011182 28928892 ~ 29011768 (+) True AMCG00009207
TU69266 other downstream 4185930 29103640 ~ 29106908 (+) True AMCG00009208

Expression Profile