RNA id: AMCG00009084


Basic Information

Item Value
RNA id AMCG00009084
length 2855
RNA type mRNA
GC content 0.45
exon number 16
gene id AMCG00009084
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 24818218 ~ 24844217 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGAATTGCGGTGTACTACTTTCTACTTGTTTTGGAGCTGTATTTCTACGAAGTGTATCCCCCCCTCGCACATTCCGTGTTGGGATCGGCCGGTTGCGAGGCCTCTGCAGTAGGGAGTGTTTGTAGGTGGAAGAACCTCGAAAGTTGGGTTTTAGAAAGGGGGCTTGgtaactttttattgtttttttattaactttccCCCTACACAAGATAACCCAGATACACAAGCAAGGATTCCGGTCAGTTCAAAGAGGGGATTTTATTCCAGCTGAAGCGGAGATCTGAATCCCCGAGCTTATGATGCCGACGTTGCGGGACAGTACGATGTCCCACCCCGGAGAGAATCCTCACCAAGTCCGGGTTAAAGCCTACTATAAGGGGGACATCATGATAACCCATTTTGAGCCGTCCATCTCCTTCGAAGGGCTGTACACTGAAGTCAGGGACATGTGCTGCATGGATAATGAGCAGCTCTTCACGATGAAGTGGATTGATGAAGAAGGAGACCCCTGCACTGTGTCTTCTCAGCTGGAGTTGGAGGAAGCGCTACGTCTCTATGAACTGAACAAAGACTCCGAGCTGATCATTCATGTGTTTCCATGTGTTCCTGAGAAGCCTGGGATGCCCTGTGCTGGAGAAGACAAATCTATATACCGTAGAGGAGCACGTCGTTGGAGGAAGCTATACTGTGCCAATGGACACACCTTCCAGGCCAAGAGATTCAACAGGCGAGCACACTGTGCTATTTGTACAGACCGGATCTGGGGCCTCGGGCGGCAGGGATACAAGTGCATTAACTGCAAGCTTCTGGTCCATAAGAAATGCCACAAACTTGTCACCATAGAGTGTGGAAGACATATGATACAGGCTATGAGCAGCAGAGAAAGTGGGAAGGTTCCGTCCAGTTTAGGCCTGGCCGACTTTGATTTGATCCGTGTCATTGGCCGAGGAAGCTATGCCAAGGTGCTCTTGGTCCGACTAAAGAAAACCGAACGCATCTACGCCATGAAAGTGGTGAAGAAGGAGCTGGTCAATGACGACGAGGACATTGATTGGGTTCAGACAGAGAAACACGTGTTCGAGCAAGCATCTAACCACCCCTTCCTTGTGGGCCTGCATTCGTGCTTCCAGACAGAGAGCAGGCTGTTCTTTGTTATTGAGTATGTGAACGGCGGGGATTTGATGTTTCATATGCAGCGACAAAGAAAGCTTCCTGAAGAGCATGCCAGGTTTTATTCAGCAGAAATCAGCCTGGCATTAAACTACCTTCATGAGCGAGGCATCATCTACAGAGACCTGAAACTGGACAATGTTTTACTAGAATCCGAGGGACACATCAAACTCACAGACTATGGCATGTGTAAGGAAGGACTACGACCTGGAGACACCACCAGCACTTTCTGCGGCACTCCTAATTACATCGCCCCGGAGATCCTGAGAGGAGAGGATTATGgATTCAGTGTGGATTGGTGGGCTCTGGGAGTCCTCATGTTTGAGATGATGGCGGGACGATCACCTTTCGACATTGTTGGCAGCTCGGACAATCCTGACCAGAACACAGAGGACTACCTCTTCCAAGttatattggaaaaacaaattagaatCCCAAGATCCTTGTCCGTCAAAGCTGCTAGTGTCCTGAAGGGATTCCTCAACAAGGACCCCAAGGAGCGTCTTGGTTGCCATCCTCAGACGGGCTTTGCTGACATCACAGGCCATCCCTTCTTCCGCAATGTCGACTGGGACCTTATGGAGCAGAAACAAGTGGTTCCACCCTTCAAACCCAACATTTCCGGGGAATATGGTCTAGATAACTTTGATGCTCAGTTTACCAACGAGCCTATTCAGCTCACCCCCGACGATGATGATGCGGTCAAGAAGATTGATCAATCAGAATTTGAAGGCTTTGAATACATCAACCCCCTTTTGATGTCTGCAGAGGAGTGTGTCTGAAAGGATCTACACTAAGTCATCACTATggcctttttaaaaagaaatcctGCATGGTTAAAGACCCTACTGTTTTGGAAGCTGTCGTTCTTTAAAACGcatctaaaaacattttaatgccaGCTGCTAATGTCAAGCTGATCTCATACTTGGCCATTTATAACCACTACTtaagtgtattattttgtatcctgTAACCAACATAAATCTGATggtcaaatatattattattattattattattattattgtcacaCCTGCTTATAATGACTGTCTCAGTGACCAATGAGATTTAAAGTTTATGTCCGGGTTACTGAcgaaaggaggaggaggaagatggaTGGGCGGTGGAGGGAGTATAAAAATAGGAGATTCATCAATGCTTATCTTTTTAGCAAATGGTGTTTGACATACGTTTCACTGTGCACTTGCAAAGTAGATGTAACACAAAAGTGAAATCTAGTGAAATTGCACTCTGGAAAGTGCGCGACTCGCCACTGCAATCTAAACCACCAACATGAAAAGTATACAGAATTGCGGtagtttatatatttgcattgcCCCCCCAagtgtaaaatttaaaatgaaatctgttttattttttctttgttttcttttcattggaAAAACTCAACATCTGTAGTAACACAAATATTCAATGAGCCTTGTGTGTTAATGGGAGAACATTTGATTGGATTTTGTGGagatacatacacagacatacaaaaatTTGGGCTGCGTTGTGGGGTGCAGTTCTAGAAGAATGCCACCAAGAATGAAGGGACATCGGAGCCAAtaaatattactgtaaatatGTGTTAAAGAACTGTGAATGGTACATGAGATTTCTATCATTAGGTTACAATAGttttgcagatctgcagaacCTGTGTGTTCAAACAGGGA

Function

GO: NA

KEGG:

id description
K06069 PRKCI; atypical protein kinase C iota type

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68038 lncRNA upstream 31133 24783510 ~ 24787085 (+) True G54430
TU67939 lncRNA upstream 539657 24277905 ~ 24278561 (+) True G54356
TU67901 lncRNA upstream 652157 24165790 ~ 24166061 (+) True G54328
TU67815 lncRNA upstream 923931 23890127 ~ 23894287 (+) True G54264
TU67787 lncRNA upstream 1153566 23664157 ~ 23664652 (+) True G54238
TU68188 lncRNA downstream 327784 25172001 ~ 25172864 (+) True G54547
TU68209 lncRNA downstream 464043 25308260 ~ 25308495 (+) True G54563
TU68212 lncRNA downstream 503061 25347278 ~ 25348983 (+) True G54566
TU68232 lncRNA downstream 560453 25404670 ~ 25413822 (+) True G54580
TU68253 lncRNA downstream 645657 25489874 ~ 25493573 (+) True AMCG00009104
AMCG00009085 mRNA upstream 1696 24813179 ~ 24816522 (+) False AMCG00009085
AMCG00009081 mRNA upstream 37467 24762016 ~ 24780751 (+) True AMCG00009081
AMCG00009080 mRNA upstream 151990 24664303 ~ 24666228 (+) True AMCG00009080
AMCG00009077 mRNA upstream 163933 24649714 ~ 24654285 (+) True AMCG00009077
AMCG00009078 mRNA upstream 170738 24634390 ~ 24647480 (+) True AMCG00009078
AMCG00009087 mRNA downstream 13796 24858013 ~ 24859230 (+) True AMCG00009087
AMCG00009083 mRNA downstream 29356 24873573 ~ 24881942 (+) True AMCG00009083
AMCG00009088 mRNA downstream 53899 24898116 ~ 24917710 (+) True AMCG00009088
AMCG00009089 mRNA downstream 106558 24950775 ~ 24958636 (+) True AMCG00009089
AMCG00009097 mRNA downstream 187885 25032102 ~ 25037678 (+) True AMCG00009097
TU68049 other upstream 1684 24812618 ~ 24816534 (+) True AMCG00009085
TU67814 other upstream 842312 23883317 ~ 23975906 (+) True G54263
TU67408 other upstream 3524317 21292241 ~ 21293901 (+) True G53917
TU67406 other upstream 3542864 21274611 ~ 21275354 (+) True G53915
TU67402 other upstream 3649643 21168231 ~ 21168575 (+) True G53911
TU68059 other downstream 70812 24915029 ~ 24917863 (+) False AMCG00009088
TU68288 other downstream 740675 25584892 ~ 25587610 (+) False AMCG00009108
TU68775 other downstream 2769366 27613583 ~ 27617378 (+) False AMCG00009164
TU69158 other downstream 3922237 28766454 ~ 28777621 (+) False AMCG00009204
TU69199 other downstream 4084675 28928892 ~ 29011768 (+) True AMCG00009207

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00035536 True 2198 mRNA 0.45 14 NC_007131.7 20363483 ~ 20410127 (-)