RNA id: AMCG00009108


Basic Information

Item Value
RNA id AMCG00009108
length 1713
RNA type mRNA
GC content 0.35
exon number 3
gene id AMCG00009108
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 25584882 ~ 25587615 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCGCTGAGGGTCTTGCTTGTCATAACAGTTTCTGGTCACCGCTgaggataaaaaaagaaacaggtcCTCAGAGGAAATGAAGTACACATCTGCTGCCTTTCTGTTTGTCACTGCATGGGCTGTATGTACCTTTGCATATAATGGGCCTCCTGCTAGCTGCTGCCTGGTTGTATCAGACACAAAACTGAAGCTTGACAGAATTGTGAATTACACTCTACAGAAAAAAGGAGTTTGCCCGGTGGATGCAGTCGTCTTCCACACAATTCGAGGGAAAAAAGTCTGCTCTGATCCCGAAAAAGACTGGgtaaaaaatgcaattgaaaagGTTGACCAGAGGGAAGTGGGGTCAAAGAATATCAACATACCcagaagacagaaaaaaggaagaaaattgAGGAAAGGCACTAACCGGAAacaaaggaaaccaaaaaacagaCAGTAGCAAATGTGATTGTAGGACATGCTATGCTTTCTCTTGGGCAAACCTTTCTATAACTTTGATAGTTCTATTTTGTctggatgtattttattttattttatttattgcaaatcacaatctaatttaatattgttgtccgagaaagtaaaacattatGGTCACATGTTATAAAAACTTGCAAGAGATAAAAGATTGAATTAattcatcaaaatgtaatgaatagtTAGGAAAATGTGATCATAAGGTAATTAATATGGATGTATTGTTGCTTCTCTCATTTGAATGTAATACTGTGGTAAAGGTTTTTAATTGAGCTGTGAAGTACTTGTGGTTTTAGTGCTGATGTATGTAACAGGCTAATAAAACTGACCACAAGATTTGAaccacaaattacatttattcttaACTCAATAAGAAAATCAGCCTGACACTCAGTCCTGAACCATATATCCttaagaagaagagaagagatacatttatattacGGAGgaatttccattaaaatatcaTGCCTTCACAACAGCTGTTTGGTACACATTTTTGGCTGTATCTACATGCTGAAAGGCCAAATAATTTAAGATCCTGCAAAAGCCCAGAATCAAGTTAATGTCTTGGCAGTTGTGTATTTACCCACAGGCGATTGCAAAGGATGAAGGCATCTCCCTGATACTTAGGACTACAGAGTCATTGACTTCTTATTGATATGACTTTGCCAAACACttacacacaacaacaaaaaccatgGGACTGCAGGGGCCAATATTTTatggattattataattaaactaatatatttgtggctttatttagtttgtgtttctCAGTCATGATTTGTTGATTGTGATATAAAAGATTCCAGTAGGCGTGGCCTACAAAGTAAGTAGGGGAGAGATAACTTAAACTTGATTTGATCTATCAAGGGAGGCAGAAGACAGAAAGAGGCAAAGACTGCAGAATTAAGATTTACACCTAGGAGAAACTTTCTGTTGCCACTCAAAAAATCCTCAGGTAACCCTAAAAACCTGGAAATTATGTTAGATTTCCAATGTATTTTTGTGCAATGCTATTACTTTAgatttgtgtaataaaatacttaacaattaggaatatttaattattaaattgcatcccttttttctctttttcctcaTATAACTCTTTTGTCTTTCTTGCCTGTGCATATGACCATATATACTGTTTATGTTTGCTTATCTCTGACTACCAGTTCTGCTTGCATTGGaggataaataaattaaaaatactgctACACAAA

Function

GO: NA

KEGG:

id description
ko04612 Antigen processing and presentation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68264 lncRNA upstream 63568 25521019 ~ 25521314 (+) True G54609
TU68263 lncRNA upstream 66973 25516373 ~ 25517909 (+) True G54608
TU68253 lncRNA upstream 91309 25489874 ~ 25493573 (+) True AMCG00009104
TU68232 lncRNA upstream 171060 25404670 ~ 25413822 (+) True G54580
TU68212 lncRNA upstream 235899 25347278 ~ 25348983 (+) True G54566
TU68374 lncRNA downstream 819922 26407537 ~ 26407814 (+) True G54705
TU68381 lncRNA downstream 901534 26489149 ~ 26491161 (+) True G54711
TU68395 lncRNA downstream 950704 26538319 ~ 26540200 (+) True G54724
TU68461 lncRNA downstream 1062867 26650482 ~ 26660346 (+) True G54777
TU68501 lncRNA downstream 1200209 26787824 ~ 26792401 (+) False G54806
AMCG00009107 mRNA upstream 10318 25571328 ~ 25574564 (+) True AMCG00009107
AMCG00009104 mRNA upstream 91483 25489711 ~ 25493399 (+) False AMCG00009104
AMCG00009096 mRNA upstream 427331 25151798 ~ 25157551 (+) True AMCG00009096
AMCG00009097 mRNA upstream 547204 25032102 ~ 25037678 (+) True AMCG00009097
AMCG00009089 mRNA upstream 626246 24950775 ~ 24958636 (+) True AMCG00009089
AMCG00009111 mRNA downstream 36182 25623797 ~ 25639855 (+) True AMCG00009111
AMCG00009109 mRNA downstream 79905 25667520 ~ 25674012 (+) True AMCG00009109
AMCG00009110 mRNA downstream 105871 25693486 ~ 25716048 (+) True AMCG00009110
AMCG00009117 mRNA downstream 910237 26497852 ~ 26509639 (+) True AMCG00009117
AMCG00009115 mRNA downstream 934249 26521864 ~ 26528491 (+) True AMCG00009115
TU68059 other upstream 667019 24915029 ~ 24917863 (+) False AMCG00009088
TU68049 other upstream 768348 24812618 ~ 24816534 (+) True AMCG00009085
TU67814 other upstream 1608976 23883317 ~ 23975906 (+) True G54263
TU67408 other upstream 4290981 21292241 ~ 21293901 (+) True G53917
TU67406 other upstream 4309528 21274611 ~ 21275354 (+) True G53915
TU68775 other downstream 2025968 27613583 ~ 27617378 (+) False AMCG00009164
TU69158 other downstream 3178839 28766454 ~ 28777621 (+) False AMCG00009204
TU69199 other downstream 3341277 28928892 ~ 29011768 (+) True AMCG00009207
TU69266 other downstream 3516025 29103640 ~ 29106908 (+) True AMCG00009208
TU69269 other downstream 3516025 29103640 ~ 29106908 (+) False AMCG00009208

Expression Profile