RNA id: AMCG00009188


Basic Information

Item Value
RNA id AMCG00009188
length 4316
RNA type mRNA
GC content 0.42
exon number 13
gene id AMCG00009188
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 28489056 ~ 28505796 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCTGAGAGAAGCTGGCGGCTCGTTTTCACTCCGGAATTTGTGGAATTTGCAgtttaatataaagaaaactcGCATTTCAGTCGCTCCTGCGTGTTCCCTGCAATTCACACCGCATCTCCCATCCGTCGGTTAAAGCTCAACCAAGCACTCACGATGTCCCAGGCTGAGAAATTGAAGCAAGGCCAGTTCACCAATCCAGAGACCCCAGGCTATGTGGGTTTTGCCAATCTACCTAACCAGGTCCACCGCAAATCTGTCAAAAAGGGATTTGAATTTACTCTCATGGTAGTGGGGGAATCTGGCCTGGGAAAGTCCACCCTGATTAACAGCCTGTTCCTCACTGACCTCTACCCTGAGAGGATCATTCCTGGAGCTGCAGAAAAGATCGAGCGCACGGTGCAGATCGAGGCCTCCACAGTGGAGATAGAGGAGCGAGGGGTGAAGCTCAGACTCACTGTGGTGGACACCCCAGGATATGGAGATGCCATCAACAGCCAGGACTGCTTCAGCACCATCATAGCCTACATCGACGACCAGTTTGAGCGGTACCTTCACGACGAGAGCGGCTTGAACCGCAGGCACATCGTGGACAACCGAGTGCACTGCTGCTTCTACTTCATCTCTCCTCTGGGCCATGGCCTGAAGCCTCTGGATGTTCAGTTCATGAAGGCCATTCATAACAAAGTCAACGTGGTGCCTGTCATCGCCAAGGCCGACACACTCACATTGAAGGAGCGCGAGAGACTGAAGCGCAGGATTTTGGATGAGATCGACGAACACGGCATCAAGATCTACCACCTCCCTGATGCCGAGTCAGATGAGGATGAGGATTTCAAAGAACAGACCCGAATTCTCAAGACCAGCATCCCGTTTGCCGTGGTGGGGTCAAACCAGCAGATTGAGGCGAAGGGGAAGAAAGTGCGTGGAAGGCTGTACCCCTGGGGAGTTGTGGAGGTGGAGAACCCTGAACACAATGACTTTCTCAAGCTGCGCACCATGCTCATaaccCACATGCAGGACCTACAGGAAGTGACCCAGGACCTTCACTATGAGAACTTCCGCTCAGAGCGCCTCAAACGGGGTGGCAGGTTGTCTTCACATGGTTACATTCTGCCTCTGTCTCCTGCGAAGGGAGCAGAGCCCGTGGAGGTTGACAAGGACATGATCCTCTTGGAAAAAGAGGCAGAGCTACGGCGCATGCAGGAGATGATTGCCAAGATGCAGGCCCAGATGCAGAAGCAGGGCGACGGAGAGGGGGAAGGGCACCATGTGTGAAAGAAGAGatcagACCCAGGCATATCGGCTCAGCAAGAATGAGGAGAGAAGAGTCTTTTGGAGCTGCTTGCCACTTTTCCTATTGCCACTCTTGTATGCGTTTTATAAGCAATATTTGTCTTtggtttttaagtttttgtttttttcttttttatacattttattattccaATGATTAATATGCGGAGTGTCCCAGGATTGGGCTTTTTTTCCCTATTTTGTTACCTggagtcatttaaaaatgaaattaagccAAATGCTGCTAGATTTTACAATGACTTACCCCATCTCCCCTGCTGACCACCTCTTTACTGCCTACTTTATGCTTCCCAGCACAGATTTGTTTGCAGAAAGATGCCTTGCTGGTTACTGGGACTTCAGCTATCTCTGAGCCTTTGCAGCAAGGAGGCCATTTCTTGAGGCTTTTCCAAAGGGAACAGCCATAGTTTGCTGTCCTATAGATCTATAGCCAGGGTGAGACACTGGCAGTATAGCTATCAAGGACAGTGTAGAAGGATTTATGCCcatgtacctttttttttttttttttttttttttcttctccctcttccccccctttctctcctctttccATTTAACTGGGCACTCACTGACAGCCCAGTTTTCCTCAAAAAAGAAATGCTCAGAATAACACCAcgtttcagtgttttgttttcttggaggTTTTTTGTTCATATCAGTAATGTGAGTTATTGCTTAATGGGCATTTGTTactattttctatttgtgcaTTGCTGTACTCTGTAGGTGTCTGGTATGTTTGGAATTAGTACATTAGTGAAAAATGTCTGTCTGGTTCAAGAAGTCTCTTAGGCTCAGTCTCACACTAAATGCTGTTGTGGCAATGTGGAGATTACTGTCCAGAACTGTATTGGTCTGAGATGTAAAGGTAAATGGGGTTTGGGGGTAGATACCTAGAGCCACAGGTTGATTTATGTTTTGAGTAATATTATTCTCTTACATTTGCATTCCATACGCAGACTATTTAGTTATGAGTTACTTACAGAAGAGCAATACTGACGAAAATGACCTGGGGAAATGAATAGAGCCATTCCACACCATTTTCTCGCTATCAAAGGCattttgtcattcgttttacAATAATGACGAGTACAAAAATCCCCCCACATAGAAGTTCCTTCCTTGCTTTAGGTTCTTGACCAATTATTAAAAGGAGGATTTAATGAAGACCAGGTcttctttgtttagtttcttttgtAAGGTATTTGTTATCATTCGTACATCTTGGAAAGCTGTTAAATTAGCTAGTAGTACAGAGGCACTTTAAATACAGATATCACGTGGCAATGTGGAGCCACACACTTTGGATAAAATGGCATTATCTTGGAATTGGTATATATACAAGAGCAGTGGGGACCAAAGGCTGTTAAAGATTTTGTAGAACCTAGAGGACCTAATAAAATGCAGCTATATAATAACAGTATTTCATAAAAGGATTTGAATGACAAAACTATTGATTTGGAGATGTTAGAGTGTGTATCAGCACACCACTCCTCAAACAGAGCTTTAACATGTTGTAACAATGCTTTACAGACTTTAAGGAATTCTGTATTATATGTGATGCAACAGCAGCaatgcaagaaaaaatatatttaaaaccattcaTTCTATTATCCTTGCATATCTTTTCACTTAactactaaatatatatacacacacatctgattttaaaatatatacatatataaaggaGTCCTATCCATTATAGTGAACACACtccaaagtttattttttattttgtatgtgtattcatAGCTCTGGAAATACAATGGATCATATTAATGCCAGTTAGGACTTAAGACTGCATTAGCAGCAAATATATTGCCTCTGTAGACACTTTAGCAGTGGAGTGAAACCCAAGGGTTTGCCTTGGGCATTTTCTGATTAATGATAAATTGTGTATGGGTGCTTTTATAGCCAGAAAATTAAATCCACTAGTCTTAACCATTGCTCTGAAAAACGTCTGCCTTCCCTCTCATATTCTCTCTGCATCTTTTTCAGTCTGTTTGCTGCTGTGTAGGCTTACTGATGTGCAGGTTCATTGAATAAAATGCCAAAAGAAATTTTTTTAGGCCATTCTAAAGAAGAATGATTAAATGTTATGTTGAACACTGAAAGGGGCGTGCGGAGATAATGTTCTCCTGAGTGTATACCCCATTATTAAGGCACAGCTGTTCTACCCAGATGTGCACACTGGTTTGCTTTAAATTGCTGTTTTACAGTGGTTGTGATTTGTGCCCCACACTCTGTGTCAACGGAGGAGCTGTTGCTATCCCCAGTGTCCGTGCGCGTTTGCACCTCGTGAAAAGCTAAGCAGAGCTCCCCGTTGACttatgttgttgcttttttattttattattttttatggtttcAAAGCAGACTGTTAATTGAGctgtgagtttgttttattgtggttCCAGTCTCCATCAAGGCAATGATCTAGATCactcatttaacatttaacttcACCTTCCAGCTGGGCCCCCCTCCCATCAAATCGGCATCACCAACAGAATGAGACGAGAGTTCTAATTGTCGCCAAGTAGCCTAAGACAggagacttaaaaataatatatatatacatcaaaatTTGTATGTAGATCAATGAAACTGCAACCAAAATCAAACTAATTCAGGCTTGGTTCACGCTGAAATAACTGAAGGATTGATCgttgcctgtttgtttttctatgtatTCAGTACTGCCAAACCAGTCTACAAGTTGTGTATTTTCCCTGTTATTCCTGAATGATTTGGCCCAGTGTCCCCAGTGATATTctacatattcatttattttttttaatgacacttTTAACAGCTCTAAGCTGCTTTGTACAACTGAATAGCCACTGAGGAAGACTGTAAAAGGGGTACAACAGTCTTACCCAGACCTTTTATATTGAAGCGGCAAACATTCCAATGTGTCCTATCTAACAATTTACTGAACTAGAAAACGTATTGAATACTGCCTTGTAATAAAGTTTCTATTAAacccaca

Function

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0031105 septin complex cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K16942 SEPT2; septin 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69038 lncRNA upstream 23830 28464562 ~ 28465226 (+) True G55257
TU68978 lncRNA upstream 105553 28383000 ~ 28383503 (+) True G55205
TU68977 lncRNA upstream 107757 28380980 ~ 28381299 (+) True G55204
TU68976 lncRNA upstream 108301 28380392 ~ 28380755 (+) True G55203
TU68975 lncRNA upstream 108686 28379515 ~ 28380370 (+) True G55202
TU69101 lncRNA downstream 121867 28627663 ~ 28630297 (+) True G55300
TU69110 lncRNA downstream 126559 28632355 ~ 28633332 (+) True G55308
TU69185 lncRNA downstream 392180 28897976 ~ 28898693 (+) True G55357
TU69229 lncRNA downstream 523522 29029318 ~ 29031478 (+) True G55394
TU69310 lncRNA downstream 679125 29184921 ~ 29185184 (+) True G55461
AMCG00009180 mRNA upstream 28902 28452750 ~ 28460154 (+) True AMCG00009180
AMCG00009181 mRNA upstream 83612 28404123 ~ 28405444 (+) True AMCG00009181
AMCG00009177 mRNA upstream 101694 28385606 ~ 28387362 (+) True AMCG00009177
AMCG00009176 mRNA upstream 367024 28101690 ~ 28122032 (+) True AMCG00009176
AMCG00009175 mRNA upstream 628930 27842533 ~ 27860126 (+) True AMCG00009175
AMCG00009189 mRNA downstream 4767 28510563 ~ 28515851 (+) True AMCG00009189
AMCG00009190 mRNA downstream 38532 28544328 ~ 28564108 (+) True AMCG00009190
AMCG00009192 mRNA downstream 87351 28593147 ~ 28596450 (+) True AMCG00009192
AMCG00009187 mRNA downstream 94122 28599918 ~ 28610586 (+) True AMCG00009187
AMCG00009191 mRNA downstream 113397 28619193 ~ 28627169 (+) True AMCG00009191
TU68775 other upstream 871678 27613583 ~ 27617378 (+) False AMCG00009164
TU68288 other upstream 2901446 25584892 ~ 25587610 (+) False AMCG00009108
TU68059 other upstream 3571193 24915029 ~ 24917863 (+) False AMCG00009088
TU68049 other upstream 3672522 24812618 ~ 24816534 (+) True AMCG00009085
TU67814 other upstream 4513150 23883317 ~ 23975906 (+) True G54263
TU69158 other downstream 260658 28766454 ~ 28777621 (+) False AMCG00009204
TU69199 other downstream 423096 28928892 ~ 29011768 (+) True AMCG00009207
TU69266 other downstream 597844 29103640 ~ 29106908 (+) True AMCG00009208
TU69269 other downstream 597844 29103640 ~ 29106908 (+) False AMCG00009208
TU69299 other downstream 667343 29173139 ~ 29174700 (+) True AMCG00009220

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00030827 False 2299 mRNA 0.44 13 NC_007113.7 22592139 ~ 22615366 (+)
grasscarp (Ctenopharyngodon idella) CI01000004_06441871_06454719.mRNA True 1985 mRNA 0.45 13 CI01000004 6441476 ~ 6455013 (-)