G55394


Basic Information

Item Value
gene id G55394
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 29029318 ~ 29031478 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU69229
attttgtttttagactTTATTTTCAGAGAACAGCATTTATAATTACAAAAGTATGAAACAACGGACAACCtgtaagcaaaacaaataatcacaTTTCTACTTCCAAAAGTAAATTGTCTGCAACCTGCACAGAACGTTTGTAAGCTTCCACTCTTGTCAACTTCTCAGTCTTCTGCAGAAATCAAGAGCAAACATGCCTCCTCGCCTTTATCAAAGAAATATACTCTATTAGCAAACAGCGGACAGTTTTTACCTGGGTTGGTAGTACCTCATCTCCACAGAAAGTCACAGTAGTGAGATTTTCAGgcaaaaaataattgttgcGATATAGCAAGCTTTCGTATACCTGGAGCTGGTTTTCAGAAGATGTATGTGAATGGATCTGAGCATCAGAAAAGTGaatcttacaaaacataaatgaaacCTACAAAACAGCAACTGTGAAGTGTCTTTCAAAGTGctataatatacatttgattGTCCCCCCAAAATACCTTCACTTTGCAatgtaacaataaattaatgggATTGCAGTCGAGCGTGCAGCAGTACAGAACTGCCTTCAAATTGGTGGAAATGACATAGTATGTATTTACCTTGACACTGAAATTCACACACTTACAGGGATGGATGTACAGGTTACTTTTTACATTATGACTGCCAACCACTTGAAGAAAGAATAACTTGTGCCAAGACACCAAGAACAGTAGCAGGGTCCCTCTCCATAAGGTAGAAATattgtttgattgtgttttgtttctccagGATTCATATTAGAATTAAAGACTAGTGCTGGGgcaataactgaaataaattgaaacaaaataaaacttttgaTCTGTATTGATTTTGCTGAACATCTGGCTGAAAACATCATGAAGTTACTTCAGTACTAAAGATGTACATTCCCTACAGTTACTTAAATACACATTCTTATGATACCTTACATAACATCGCTTTTCCCTTTTACAGTCTGTAATTGAAAATGGCATCTTCAGAAGTGCCTTTTTTTAGTAAACAGATTTTGTAATAACTACAACTAGATTATGATGTTTATATAGTAAGTATACACATGTAATTATATgaaatttgttattgtttttaatgattaattcaCTTTTTGTATAGATTGATGTTCGATaccttgttttgcatttattacaGACTCATAACTTGATATTGAAACTAGAGAAATAGCAAGTAATACATAGTCACTGAGGATTTGGTGTCTATGTCTTGCTGTGGCAGGGTCCAATTTTACTAACAGTAGGAAGAGGCCTGGTGAGATGTCTTAGGTCTTATGATATTTTGATATAGTCTTTTCATTCTATTCAGTCCAGTCTTTGGAGTTGCATATGGAGTCCATATTAATTTACTGTTCCCAGAAGAGAAAGCAGCCGTTAACCTTGACCAAGCCTGAACAACAGAGCTCACTTAACTGAACGTCCCTTCTTTGACACTTGAACCGCTTCTTGATTCACTTGGAAACTGTCTGGGTGGGTCTTAAAAGGCCATCTACACGAGGCCTGCCTTTGCTGGGCAGCTCTGAGCTCTCTCGGTAGTCCCTTGGTTTGGTGGGGGGAGGATCAGGACGTGACTTAGCTGGAAGGGAAGGGGGAATCTTTGGCAGTATGCCGCAATCAGAACGGGATGGTACCACCGGTTTCTTAAGGCCAGGAGGCTGAAGGTTGCAGGGAGGCTTTGTCTCCGAGTAGGTAAAAGAGCGGTTCCGGGGGGTGGGCACAGGAGGTGGGCGTTCTCCTTCCACCTCCAGGATCTTTGGGAAGGGAAAGAAAGCATCTTGGGGTGTTAGCTGATCCTTGCGGTTGGGCCGCTGGGAGTCCTGCTCCTTGCGGCCTGATAACTTTGGCATTTCCCTGGATCCATACAGAGGATTGTCAAACATCTCTGGGGGTCTCCCATCCTCTGACCTGCAGGGACAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU69229 True 1943 lncRNA 0.40 2 29029318 29031478

Neighbor

gene id symbol gene type direction distance location
AMCG00009202 NA coding upstream 9426 29014392 ~ 29019892 (+)
AMCG00009206 NA coding upstream 102490 28910313 ~ 28926828 (+)
AMCG00009203 ryk coding upstream 136274 28867586 ~ 28893044 (+)
AMCG00009205 NA coding upstream 192906 28802969 ~ 28836412 (+)
AMCG00009198 NA coding upstream 266800 28756555 ~ 28762518 (+)
AMCG00009214 LOC106599142 coding downstream 43603 29075081 ~ 29102077 (+)
AMCG00009221 NA coding downstream 277378 29308856 ~ 29309773 (+)
AMCG00009218 NA coding downstream 335160 29366638 ~ 29402226 (+)
AMCG00009219 LOC100694679,LOC102204076,LOC108271779,LOC105925372,LOC102787755,LOC102295835,LOC101474685 coding downstream 384958 29416436 ~ 29419290 (+)
AMCG00009225 NA coding downstream 430007 29461485 ~ 29470524 (+)
G55357 NA non-coding upstream 130625 28897976 ~ 28898693 (+)
G55308 NA non-coding upstream 395986 28632355 ~ 28633332 (+)
G55300 NA non-coding upstream 399021 28627663 ~ 28630297 (+)
G55257 NA non-coding upstream 564092 28464562 ~ 28465226 (+)
G55205 NA non-coding upstream 645815 28383000 ~ 28383503 (+)
G55461 NA non-coding downstream 153443 29184921 ~ 29185184 (+)
G55463 NA non-coding downstream 155216 29186694 ~ 29187955 (+)
G55487 NA non-coding downstream 426943 29458421 ~ 29458743 (+)
G55512 NA non-coding downstream 610011 29641489 ~ 29641936 (+)
G55564 NA non-coding downstream 826817 29858295 ~ 29932152 (+)
AMCG00009207 rab6ba,rab6b,LOC107552273,LOC107696768,LOC103151367,LOC106527458,LOC107088682,LOC102207753,LOC107752652 other upstream 17550 28928892 ~ 29011768 (+)
AMCG00009204 NA other upstream 229718 28766454 ~ 28799600 (+)
AMCG00009164 NA other upstream 1403307 27613583 ~ 27626011 (+)
AMCG00009129 NA other upstream 2232550 26793537 ~ 26796768 (+)
AMCG00009108 NA other upstream 3441703 25584882 ~ 25587615 (+)
AMCG00009208 NA other downstream 72130 29103608 ~ 29108227 (+)
AMCG00009220 lsm2,LSM2,smx5 other downstream 139845 29171323 ~ 29174731 (+)
G55573 NA other downstream 876433 29907911 ~ 29911564 (+)
G55591 NA other downstream 963648 29995126 ~ 29995438 (+)
G56060 NA other downstream 3130282 32161760 ~ 32165365 (+)

Expression


Co-expression Network