G55487


Basic Information

Item Value
gene id G55487
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 29458421 ~ 29458743 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU69342
CTTTATTTAACTCTGCTACGACTTGGACTGCTGATACGTTTGAAAAGTTTAATAATTCACTcattgcaaaacagaaaaaaaaaaaacatctccatCGCAACCAATCGTTATGTGACGCCAACGAGGAAGCCCCGATTCTGCAACATTGTCTATTGATTAACACACGTtacaaacaaatagaaacaaGCATACTTACCGAGAGaacaaatatatgtgtgtatatatattgaaataaaaccaaataattaatatcaggggggaaaaaaaatcacaaaacacacaaaacaaaaaaatcctgtttAACTAGCAAGTGCAGTTCCACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU69342 True 323 lncRNA 0.34 1 29458421 29458743

Neighbor

gene id symbol gene type direction distance location
AMCG00009219 LOC100694679,LOC102204076,LOC108271779,LOC105925372,LOC102787755,LOC102295835,LOC101474685 coding upstream 39131 29416436 ~ 29419290 (+)
AMCG00009218 NA coding upstream 56195 29366638 ~ 29402226 (+)
AMCG00009221 NA coding upstream 148648 29308856 ~ 29309773 (+)
AMCG00009214 LOC106599142 coding upstream 356344 29075081 ~ 29102077 (+)
AMCG00009202 NA coding upstream 438529 29014392 ~ 29019892 (+)
AMCG00009225 NA coding downstream 2742 29461485 ~ 29470524 (+)
AMCG00009224 NA coding downstream 25800 29484543 ~ 29487155 (+)
AMCG00009223 NA coding downstream 70136 29528879 ~ 29529494 (+)
AMCG00009222 tp63 coding downstream 104365 29563108 ~ 29573053 (+)
AMCG00009227 NA coding downstream 189874 29648617 ~ 29653337 (+)
G55463 NA non-coding upstream 270466 29186694 ~ 29187955 (+)
G55461 NA non-coding upstream 273237 29184921 ~ 29185184 (+)
G55394 NA non-coding upstream 426943 29029318 ~ 29031478 (+)
G55357 NA non-coding upstream 559728 28897976 ~ 28898693 (+)
G55308 NA non-coding upstream 825089 28632355 ~ 28633332 (+)
G55512 NA non-coding downstream 182746 29641489 ~ 29641936 (+)
G55564 NA non-coding downstream 399552 29858295 ~ 29932152 (+)
G55586 NA non-coding downstream 516860 29975603 ~ 29976267 (+)
G55595 lsg1 non-coding downstream 534879 29993622 ~ 29994641 (+)
G55596 NA non-coding downstream 536820 29995563 ~ 29995870 (+)
AMCG00009220 lsm2,LSM2,smx5 other upstream 283690 29171323 ~ 29174731 (+)
AMCG00009208 NA other upstream 350194 29103608 ~ 29108227 (+)
AMCG00009207 rab6ba,rab6b,LOC107552273,LOC107696768,LOC103151367,LOC106527458,LOC107088682,LOC102207753,LOC107752652 other upstream 446653 28928892 ~ 29011768 (+)
AMCG00009204 NA other upstream 658821 28766454 ~ 28799600 (+)
AMCG00009164 NA other upstream 1832410 27613583 ~ 27626011 (+)
G55573 NA other downstream 449168 29907911 ~ 29911564 (+)
G55591 NA other downstream 536383 29995126 ~ 29995438 (+)
G56060 NA other downstream 2703017 32161760 ~ 32165365 (+)
G56368 NA other downstream 4542053 34000796 ~ 34031445 (+)
G56369 NA other downstream 4556927 34015670 ~ 34018815 (+)

Expression


Co-expression Network