G55463


Basic Information

Item Value
gene id G55463
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 29186694 ~ 29187955 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU69312
tacatagaaattcaatacttttattttacattcatacatctatattttacaatataagcTTAATGCAGTTTAAAGAAGCCCAACCCCAAATATTTCCTGAAGATTTACAGCTCAAGCAATGTTGAATTTGCGGGTTTTCAAAGATagatgaaaagcagaaaaacaaaacaaaaaacaaaaacatgaacaggACCAATATTGTCCTGCAGTCGTACCTTAATAGAGCTGGGCTGAATGAAGTTTCAGTCACCACAGAAAAAGGCACCTTGAGTACACAGTGTATGTACAAACAAGAACTGAACAATATTACACCCTACTTTAGCTTCTAAAACAATGACGGAAAACTGTAAACCTTcacttgcaaaaaaaaacaaaacaaacaaacacatctatacaaataatttgaagCAATTTagacaaaatattttcttgctTATACAGAAGCAATaccttaaaatacatattttaaacattaattccaGATTACTTTCTGCCAGCAGAAAGCAATCCAATCTTGACATAATTATACATTGTCAcataatatttatgaaattgCCAATTTCCTTAATTTTACAGTCAGCGAAAAATCCACTGTTTCGTGCATCAAAGTGTTTAGTTCAGTTTTGAAAGATTCTGATAGTCATAACATGTACacctatatataaatgtatagttatTTTACGACCATTTCCCTAAAAAATATACCATCCAATCAATCAAAATTTCTGTAATACTTTCAGAAAAGTAtgttctttatataaaatactatatcCTCAAAAACTGGATTTTTATAGGTTTACATTCCATCCTTTTTTTTCACCAAAATAAAGCTTTATATACTTCAGAAAGCTTATAAACACTCccatcttatatatatatatatatatatatatatatacacatacatatacatacacaataaaGTGACTATAAATAAGAGAAGATCTGATTCTAGTTTCACATGTAGAGGAAACCCGTTTGGGGAGGCATATTCTGCCCAGGTTTTTATCCGGTGCAGTGTGGCACTACAAGTTTGGACGATTGTACAAGTCAGGTCCTTCAAATCCAAGGTCAGATTTGCTTTCCAGTTGCTGCTCAGCAGGCCTTGGTTAGGTCAGTTGGCAGTTCTGTAGTGGACATGCGGTACTGAATTTTTGTGTTGGTGATGGCTCCGTGTTTCTGTCGAAGGTGGAGTCTCAGTTGACTCTTGTGGCGAAAGTGCAAGTTGCATTTCTcac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU69312 True 1238 lncRNA 0.33 2 29186694 29187955

Neighbor

gene id symbol gene type direction distance location
AMCG00009214 LOC106599142 coding upstream 84617 29075081 ~ 29102077 (+)
AMCG00009202 NA coding upstream 166802 29014392 ~ 29019892 (+)
AMCG00009206 NA coding upstream 259866 28910313 ~ 28926828 (+)
AMCG00009203 ryk coding upstream 293650 28867586 ~ 28893044 (+)
AMCG00009205 NA coding upstream 350282 28802969 ~ 28836412 (+)
AMCG00009221 NA coding downstream 120901 29308856 ~ 29309773 (+)
AMCG00009218 NA coding downstream 178683 29366638 ~ 29402226 (+)
AMCG00009219 LOC100694679,LOC102204076,LOC108271779,LOC105925372,LOC102787755,LOC102295835,LOC101474685 coding downstream 228481 29416436 ~ 29419290 (+)
AMCG00009225 NA coding downstream 273530 29461485 ~ 29470524 (+)
AMCG00009224 NA coding downstream 296588 29484543 ~ 29487155 (+)
G55461 NA non-coding upstream 1510 29184921 ~ 29185184 (+)
G55394 NA non-coding upstream 155216 29029318 ~ 29031478 (+)
G55357 NA non-coding upstream 288001 28897976 ~ 28898693 (+)
G55308 NA non-coding upstream 553362 28632355 ~ 28633332 (+)
G55300 NA non-coding upstream 556397 28627663 ~ 28630297 (+)
G55487 NA non-coding downstream 270466 29458421 ~ 29458743 (+)
G55512 NA non-coding downstream 453534 29641489 ~ 29641936 (+)
G55564 NA non-coding downstream 670340 29858295 ~ 29932152 (+)
G55586 NA non-coding downstream 787648 29975603 ~ 29976267 (+)
G55595 lsg1 non-coding downstream 805667 29993622 ~ 29994641 (+)
AMCG00009220 lsm2,LSM2,smx5 other upstream 11963 29171323 ~ 29174731 (+)
AMCG00009208 NA other upstream 78467 29103608 ~ 29108227 (+)
AMCG00009207 rab6ba,rab6b,LOC107552273,LOC107696768,LOC103151367,LOC106527458,LOC107088682,LOC102207753,LOC107752652 other upstream 174926 28928892 ~ 29011768 (+)
AMCG00009204 NA other upstream 387094 28766454 ~ 28799600 (+)
AMCG00009164 NA other upstream 1560683 27613583 ~ 27626011 (+)
G55573 NA other downstream 719956 29907911 ~ 29911564 (+)
G55591 NA other downstream 807171 29995126 ~ 29995438 (+)
G56060 NA other downstream 2973805 32161760 ~ 32165365 (+)
G56368 NA other downstream 4812841 34000796 ~ 34031445 (+)
G56369 NA other downstream 4827715 34015670 ~ 34018815 (+)

Expression


Co-expression Network