RNA id: AMCG00009189


Basic Information

Item Value
RNA id AMCG00009189
length 2034
RNA type mRNA
GC content 0.57
exon number 11
gene id AMCG00009189
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 28510563 ~ 28515851 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGCAGAATTGTGTGGAAGTCAGTGGAGAACAGCCCCTTAAACCAGTCTTTTCAAAGACAGACCCCAATACTCTCCATCTGGCCCTTGGCAAGACCCTTCTTCCTCACAGGCCCTCAAGCAACACCAAAAGGGCAACCCAGGTGAAGCAGGGGGTCAACGAGAGAAGGACTATGCCTGAGGACGTGTTGGCGGAACTTAAGGAGAAATTGCAAGGAGACAGCAAGGTGGGGAAGGCCAAAAAGGAGAAGTCACAGAAGACAAAGGCAAGCAACAAGCTCTCCTGGCTCACCTATGAGCGTCTGTCCAGCTTCATTGGGGGAAAGCATTCCCACACTGACTCTACAACAGTGTCTCCCACTCAGGATGGAAAACCCCCTGAATCAGAAACTCTGGGAACCAATATCCAGAGGCATTTGAGAAACCCAGTGGACCAGGAAGCCAACTCCAAAGGTCAGGCAGCCACGCTGACCAGAAGCCGAGAGGGAGGCCTGTGCTGGAGAGCAGACCTGCCTCTTCAGGAGCAGTTTAAGACAGAGCCCAGAGATGGTGCAGTCTCTGCTTGTGCCACCACACCACAGGAAGCGCAAGCCCAGGAGGATGTCGCCGTGCCTAATCCTGTCCAGGGAGACTGGAAGAATGACTTCTCTTTAGAGGCGCGGTTCTGGCAGGAGCGGAGCATGGTGCAGGAGAGTGGCATTCTGGAGCAGCTCAGTCAGCAGGAGCTCCTGCTGCAGGAGAGCAAGTATGAGGTGGTGACCACCGAAGCGTCCTACCTCGCCAGTCTGAGGGTGGCTGTGGAGCATTTCATGGAGTCTCCGAAGCTCAGCGCCGCCCTGGGTCCTCTTGATCGAAAATCCCTCTTCTCCAGCATCACCAAGATCAGGGAGATCAGCCAGAATTTCCTAGATGAGCTGAAGAGCAGGCAGGAGGGCAGTGTTTTCTGTGATGTGTGCGAGGTCATCCAGAGCCACGCCAAAGACCATTTCTCCGCCTATGTCGACTACATCCGCAACATGCCCTACCAGGAGCAGACCCTACACAACCTGGGAAAGGAGAAGCCCCAGTTTGTGGAGATCCTGCAACTTCTCCAGGAGGACCCGCGCTGCCACCGCTTGCACCTCAAGTCCTTCCTGGTGCTGCCCTTCCAGAGGATCACTCGCCTTAAGATCCTGGTGGAGACCATTCAGAAGAGGACAGAGCCGGACTCCGAGGAGCACAGGTCAGCAGAGAGAGCCCTGAAAGAGGTCTCCAAGGTGGTGGAGGACTGCAACCGCGAAGTGGGCAAAATGAAACAGATGGAGGAGCTGGTTCACATCGCCAACAAGATGGAGTTTGAGTGCAAGGGCCTCCCTCTGGTCTCCTCATCACGCTGGCTAGTGAAGCAGGGGGAGCTGGTCCAACACACTGACAAGGAGAACATCTTTGGTCAGAAGAAGCTCTCCCCTGTCTACCTGTTCCTCTTCAATGATCTTCTGCTGGTGGCTGTGAGGAAGGGGGTGGATCGCTTTGTGGTCCAGGATCACGTGCACCACTCGCTCATCGACATCAGCGATGCAGCGCAGGAGGAGGGGCTGGACTGTCAGCTGGAGAAGAGCTTCCTGTTGGTTCTGCTGAAGAACCACCATGGAGGCACCTCCCAGCGCCTGCTCCGCGCCTCCTCACAAGCGGAGAGGGACAGCTGGGTGGAGGTGCTGTTGCCGGACAGTAGCAAGGGGGACAAAGTGTATGAAGAGTGGGACTGCCCCCAGGTCCACTGCACACAGTCTTACACTGCCCTGCAGCCCGGAGAGCTCAGCCTGCAGCCTGGGGACATTCTCAACGTCATCCAGAAAACTACTGATGGCTTCATGGAGGGCTGGCAGCTGCTGAGTGGAGCGAGAGGCTGGTTCCCCAGCAGCTTTGTGAAGGAGATCAACAATGAGCTTGTGCAGAGGAAGCACCTCCGCCAGCGCTACCAAGTCCTGCAGGCGGCCAACAGGCTGCTGAGCCTCTGCACCCTGTTCCAAGAGCGGCGCGTCTCCACCTGCTTCCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69038 lncRNA upstream 45337 28464562 ~ 28465226 (+) True G55257
TU68978 lncRNA upstream 127060 28383000 ~ 28383503 (+) True G55205
TU68977 lncRNA upstream 129264 28380980 ~ 28381299 (+) True G55204
TU68976 lncRNA upstream 129808 28380392 ~ 28380755 (+) True G55203
TU68975 lncRNA upstream 130193 28379515 ~ 28380370 (+) True G55202
TU69101 lncRNA downstream 111812 28627663 ~ 28630297 (+) True G55300
TU69110 lncRNA downstream 116504 28632355 ~ 28633332 (+) True G55308
TU69185 lncRNA downstream 382125 28897976 ~ 28898693 (+) True G55357
TU69229 lncRNA downstream 513467 29029318 ~ 29031478 (+) True G55394
TU69310 lncRNA downstream 669070 29184921 ~ 29185184 (+) True G55461
AMCG00009188 mRNA upstream 4767 28489056 ~ 28505796 (+) True AMCG00009188
AMCG00009180 mRNA upstream 50409 28452750 ~ 28460154 (+) True AMCG00009180
AMCG00009181 mRNA upstream 105119 28404123 ~ 28405444 (+) True AMCG00009181
AMCG00009177 mRNA upstream 123201 28385606 ~ 28387362 (+) True AMCG00009177
AMCG00009176 mRNA upstream 388531 28101690 ~ 28122032 (+) True AMCG00009176
AMCG00009190 mRNA downstream 28477 28544328 ~ 28564108 (+) True AMCG00009190
AMCG00009192 mRNA downstream 77296 28593147 ~ 28596450 (+) True AMCG00009192
AMCG00009187 mRNA downstream 84067 28599918 ~ 28610586 (+) True AMCG00009187
AMCG00009191 mRNA downstream 103342 28619193 ~ 28627169 (+) True AMCG00009191
AMCG00009199 mRNA downstream 160746 28676597 ~ 28723790 (+) True AMCG00009199
TU68775 other upstream 893185 27613583 ~ 27617378 (+) False AMCG00009164
TU68288 other upstream 2922953 25584892 ~ 25587610 (+) False AMCG00009108
TU68059 other upstream 3592700 24915029 ~ 24917863 (+) False AMCG00009088
TU68049 other upstream 3694029 24812618 ~ 24816534 (+) True AMCG00009085
TU67814 other upstream 4534657 23883317 ~ 23975906 (+) True G54263
TU69158 other downstream 250603 28766454 ~ 28777621 (+) False AMCG00009204
TU69199 other downstream 413041 28928892 ~ 29011768 (+) True AMCG00009207
TU69266 other downstream 587789 29103640 ~ 29106908 (+) True AMCG00009208
TU69269 other downstream 587789 29103640 ~ 29106908 (+) False AMCG00009208
TU69299 other downstream 657288 29173139 ~ 29174700 (+) True AMCG00009220

Expression Profile