RNA id: AMCG00009192


Basic Information

Item Value
RNA id AMCG00009192
length 1652
RNA type mRNA
GC content 0.46
exon number 3
gene id AMCG00009192
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 28593147 ~ 28596450 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCAAATCTGGGCAGACCTGCGGAAATTTGCGCCTCAAGAACGCGACCTCTGTCCTGGTGTTTTTCTCCAACTGCTTGCCGTACTTGAATCACGGTGGATGCCGCGGCATGGGAATGAGCTAATAATCATGTACCTAAGCAAGAACCTTTGCGGATTAATGGACTCGAAAGTAACTGTTAATACCTGTAACCTGATCCGCTTTAGGAAAGAGGCAGTGggacagaaagaaaggaaataacGCGGCGAGGAAGTCCAGGTAACCCTTCCACACGCATGCAACACCTTGTCACCCCGTTTAAACCTGCGAGTCCTGCCGTTGAAACTGATTCGCGCTCGGTGGGTCCGGGCAAGGATTTGACCCCCCGAGCCTCCGAGTCTGTCCCCCTGGCCTTACCTGGTTCCGCAGGTCCCGGAGAGACCCTCCACATAAACACAGCCTCCCGTTCTGTCACTCCGGGCTGTTTTCGGGTCCGATTCGCCCCCTCGAGGCTCCCGCAGCTGCGCGACAGTGTTACGTCTGccaCAATTGACAGGCTGAAGAAAAGAGATATTCCTGCTTACAGAAGCTTCTCAGCCCACGTTTTCCTGGGAGCTGCACAGCCAGGCTGCGTAACACTGTCGAGAGGAGAGGGGAGCCCTGAGGCGAGGGAGGGAGTCAGGGGCTACTGGAAGAGCTGAGGGTTGGGCATTCCTTCAGCAAGCCCAGGCACCGATCTCTGTCTTCAGGGAGGGTGGAAGGTGGAAGGGTTGCTTTATGAAAAGTGATTATTATTCAGTCATCTGTTGGAGGTGTTTtataaaccttttttgttttccttgttgcCTGTTAGGCTATATCTCTTACAAATATGCACATCTAGATTTACACAGAAATCAAGCTTGTTTTACAACTAACAGGTATCTCTGTTTTTTCAGAGCTGAATGGTCAAATTTGAATATCTACAGCTGGCACTACTTCCTGACTCTAATTTCTAGAGAAACAGTGAGTCTCACATTCTAACCTCTGTTCCTTAGAAACTTACAGCACCCTGAACAGGAAAACTCCTGTACCACTACACCCACGCCTGTAATATTATGGCAACTACTTACGAGAACTCAAAAGAGGTCCTTGAACTGATTCCCTTTGTTGTTAATTTACAATTCAGCTTTAATGGTTTCACtttgatgtttctttttgtaattgGCCGACTTCAAAAACtcagctgtaaaaaaaacaatataaatttacAAGGAACTAGCTGTTAAAAGGTGTCAGGTCTTGCAGACTTCATCTGCCTACTGGAATTACAGAACAGTCTTGTCACCAGGTAGATGGATCCTTGTGCTCTTCTACAGAGAGGTGGAATAACTGATGTGCCTAGTTATTGTCAATTtctttctacatttaaaaaaaaatgtttcccccCTGTTATCAATGCCCAGTGTTCTAAGCATTGGCTACTCTGGCAAGGTTTTATGTTTTAGATAAAATGTTCCTGCAAAGACTAATGAAAAACCTTTGTGTGTGAAACAAAACCTTCACCATCTCTACATTAAAATATCCGCTAAGCAAGGACAATGCAGCCGATATAAACTTCACTGCAGGAGGGCAACAGACCAGCCctggtgggaaaaaaaaactcctgcAGTGGTTTGTGGAGATCTTGAAAAT

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process

KEGG:

id description
ko03010 Ribosome
ko00970 Aminoacyl-tRNA biosynthesis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69038 lncRNA upstream 127921 28464562 ~ 28465226 (+) True G55257
TU68978 lncRNA upstream 209644 28383000 ~ 28383503 (+) True G55205
TU68977 lncRNA upstream 211848 28380980 ~ 28381299 (+) True G55204
TU68976 lncRNA upstream 212392 28380392 ~ 28380755 (+) True G55203
TU68975 lncRNA upstream 212777 28379515 ~ 28380370 (+) True G55202
TU69101 lncRNA downstream 31213 28627663 ~ 28630297 (+) True G55300
TU69110 lncRNA downstream 35905 28632355 ~ 28633332 (+) True G55308
TU69185 lncRNA downstream 301526 28897976 ~ 28898693 (+) True G55357
TU69229 lncRNA downstream 432868 29029318 ~ 29031478 (+) True G55394
TU69310 lncRNA downstream 588471 29184921 ~ 29185184 (+) True G55461
AMCG00009190 mRNA upstream 29039 28544328 ~ 28564108 (+) True AMCG00009190
AMCG00009189 mRNA upstream 77296 28510563 ~ 28515851 (+) True AMCG00009189
AMCG00009188 mRNA upstream 87351 28489056 ~ 28505796 (+) True AMCG00009188
AMCG00009180 mRNA upstream 132993 28452750 ~ 28460154 (+) True AMCG00009180
AMCG00009181 mRNA upstream 187703 28404123 ~ 28405444 (+) True AMCG00009181
AMCG00009187 mRNA downstream 3468 28599918 ~ 28610586 (+) True AMCG00009187
AMCG00009191 mRNA downstream 22743 28619193 ~ 28627169 (+) True AMCG00009191
AMCG00009199 mRNA downstream 80147 28676597 ~ 28723790 (+) True AMCG00009199
AMCG00009201 mRNA downstream 132946 28729396 ~ 28735853 (+) True AMCG00009201
AMCG00009200 mRNA downstream 139833 28736283 ~ 28755174 (+) True AMCG00009200
TU68775 other upstream 975769 27613583 ~ 27617378 (+) False AMCG00009164
TU68288 other upstream 3005537 25584892 ~ 25587610 (+) False AMCG00009108
TU68059 other upstream 3675284 24915029 ~ 24917863 (+) False AMCG00009088
TU68049 other upstream 3776613 24812618 ~ 24816534 (+) True AMCG00009085
TU67814 other upstream 4617241 23883317 ~ 23975906 (+) True G54263
TU69158 other downstream 170004 28766454 ~ 28777621 (+) False AMCG00009204
TU69199 other downstream 332442 28928892 ~ 29011768 (+) True AMCG00009207
TU69266 other downstream 507190 29103640 ~ 29106908 (+) True AMCG00009208
TU69269 other downstream 507190 29103640 ~ 29106908 (+) False AMCG00009208
TU69299 other downstream 576689 29173139 ~ 29174700 (+) True AMCG00009220

Expression Profile