RNA id: AMCG00009201


Basic Information

Item Value
RNA id AMCG00009201
length 2155
RNA type mRNA
GC content 0.49
exon number 13
gene id AMCG00009201
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 28729396 ~ 28735853 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGTAactgtactattattattgtacagtagCATTTCCTGTTCAGCTTTCCACACGTCTCTTGGAAGTTGCTCACACCTGTTATAACATCATCCCAAGATCCTCGCTGTCTCATGGAGGACAGAGTAGACCGGGTGCCAAATGACCCCAGCCCGTCTGATGGGGGAACTCTGCAGTGTGAGGGGCAGGAAGAGAGAATCTTTATGGATTACAATGCCACCAGTCCCCTGGACCCCGCAGTCATCGAGGCCATCACAGAGGCCCTGCGAGAAGCGTGGGGGAACCCCAGCAGCAACTATTTGCCGGGTAAAAAAGCAAAAGACATTATTAATCAAGCAAGAGAGAATATAGCCAGGATGGTGGGAGGACAAGCAGATGACATTATTTTCATGTCAGGTGGAACAGAGGCAAATAACTTTGTATTCCACACGGCCATCAAGTATTTCTGGGACACTCTGGGTCAGAATGGTCGGGAGGATGGACCTCTCACTGGGGACGTTGCCTTGCCTCACATCATCTCCTCCAGTGTGGAGCACGACTCCATCAAACTAACAGCTGAACACCTACTGAAAATGGGGAGGGCAGATCTGACATTTGTGCCCGTTTCCAAGGTGACGGGGCAAGTGGACATTGATGATGTGATGAGAGCCATCAAGCCCACCACCTGTCTGATCTCCATCATGCTGGCCAACAATGAGACTGGAGTCCTGATGCCAGTTAAGGAGATCTGCAGCAGAGTACGGGAACTGAACCAACAGAGGCCTGCTCCCAGAATCCTCATGCACAGCGATGCAGCCCAGGCCATTGGCAAGCTGCGGGTAGACTGTCAGGAACTCGGCGTGGATTACCTCACCATTGTTGGACACAAGTTTTATGCCCCAAGGATTGGAGCGCTGTATGTGAGGGGTCCTGGAACCACATCTCCCATATTCCCCATGTTCTTCGGAGGTGGGCAGGAGAGGAACTTTAGACCAGGgaCAGAGAACACCCCAATGATTGCTGGACTCGGAAAGGCCGCAGAGCTGGTGAACAGAAACCTGAGTCATTATGAAGCTCATCTGCGTCAGACCAGAGACTACCTGGAGGAGCGCCTGGAGgCCATCTTTGGGAAGGAGAAGATCCATTTTAACAGCCATTTTGAAGGCTCAGAGATCCTGCCAAATACTTGCAATGTTTCAATTCTGGGCACAAAACTGCAAGGCCGTCAGGTGCTATCTCACTGTCGGAGGCTGCTGGCCAGTGTGGGAGCAGCGTGTCACTCAGACAGAGGAGACAGGCCTTCTCACATCCTGCTGAGCTGCGGCATTCCTCCCGCGGTCGCCGCCAGTGCACTGCGCCTCAGTGTGGGTCGAGGCACCACCTTCCAGGATGTGGACCTGGCCGTGCAGGACCTGAGGGAGGCTGTGCTTCAGTTGGAAGAGCATAACTAGCACCCAGGAGAAAGAGAGGCACTGCCAGGCCAAGGTTTCAGTGCCTCTCTTCCCTGTCCCTTCTGAAGGCTTATTtagcattgtattttatttgattaaaaactgGTCATTGGTTGAAACTAGGTAATTAAAagtatgatttaaatgttttgtttacattgagGGTCCATTTACAAGGTGTGAAGCCCTGGGCACTAGCTCTGTCAGTGTGGGGCATAATGGAGGTGTGTGGTCAGTGTCTAGAGTCCATTTGCACTGTCAGCTGAGGAAGTCCATAGCCAGCTGTGCTGTACCCAGGCACCTCCAGGCTATAGGACTGGACTCAAGATGGAGGCTTTACTGGTTGAGCTGTTagtttgttgtattattataacattgtaacttgaaatgtttgtataggtctttttttgtgtgtagtgTGAAGGGCACTGTATACAGCAGGGCAAACTGTTCCACTACATGAAATCAAGTTCAATTCTTTGGAAGTTGtgatgcagttttgtttttaatcccaAGGCCTACAGATTCTGACATCCTGCAGTTTCAATTGATGGAATCCCAACGATGCTCGGCTCATGTTATAAGTTACTGAATTAATGAAAAGGGGAATGagacagcattttatttttttgtttgtaatttatatCTAATGACAACCTGCACTTTAGTACTGTTTGAAGGGAAACCTCTATCAGGACTACCACAATAAAACACctttgaagaaaa

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0016829 lyase activity molecular_function

KEGG:

id description
K01763 SCLY; selenocysteine lyase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69110 lncRNA upstream 96064 28632355 ~ 28633332 (+) True G55308
TU69101 lncRNA upstream 99099 28627663 ~ 28630297 (+) True G55300
TU69038 lncRNA upstream 264170 28464562 ~ 28465226 (+) True G55257
TU68978 lncRNA upstream 345893 28383000 ~ 28383503 (+) True G55205
TU68977 lncRNA upstream 348097 28380980 ~ 28381299 (+) True G55204
TU69185 lncRNA downstream 162123 28897976 ~ 28898693 (+) True G55357
TU69229 lncRNA downstream 293465 29029318 ~ 29031478 (+) True G55394
TU69310 lncRNA downstream 449068 29184921 ~ 29185184 (+) True G55461
TU69312 lncRNA downstream 450841 29186694 ~ 29187955 (+) True G55463
TU69342 lncRNA downstream 722568 29458421 ~ 29458743 (+) True G55487
AMCG00009199 mRNA upstream 5606 28676597 ~ 28723790 (+) True AMCG00009199
AMCG00009191 mRNA upstream 102227 28619193 ~ 28627169 (+) True AMCG00009191
AMCG00009187 mRNA upstream 118810 28599918 ~ 28610586 (+) True AMCG00009187
AMCG00009192 mRNA upstream 132946 28593147 ~ 28596450 (+) True AMCG00009192
AMCG00009190 mRNA upstream 165288 28544328 ~ 28564108 (+) True AMCG00009190
AMCG00009200 mRNA downstream 430 28736283 ~ 28755174 (+) True AMCG00009200
AMCG00009198 mRNA downstream 20702 28756555 ~ 28762518 (+) True AMCG00009198
AMCG00009204 mRNA downstream 31769 28767622 ~ 28799600 (+) True AMCG00009204
AMCG00009205 mRNA downstream 67116 28802969 ~ 28836412 (+) True AMCG00009205
AMCG00009203 mRNA downstream 131733 28867586 ~ 28893044 (+) True AMCG00009203
TU68775 other upstream 1112018 27613583 ~ 27617378 (+) False AMCG00009164
TU68288 other upstream 3141786 25584892 ~ 25587610 (+) False AMCG00009108
TU68059 other upstream 3811533 24915029 ~ 24917863 (+) False AMCG00009088
TU68049 other upstream 3912862 24812618 ~ 24816534 (+) True AMCG00009085
TU67814 other upstream 4753490 23883317 ~ 23975906 (+) True G54263
TU69158 other downstream 30601 28766454 ~ 28777621 (+) False AMCG00009204
TU69199 other downstream 193039 28928892 ~ 29011768 (+) True AMCG00009207
TU69266 other downstream 367787 29103640 ~ 29106908 (+) True AMCG00009208
TU69269 other downstream 367787 29103640 ~ 29106908 (+) False AMCG00009208
TU69299 other downstream 437286 29173139 ~ 29174700 (+) True AMCG00009220

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000340_02431091_02437843.mRNA True 1713 mRNA 0.43 9 CI01000340 2430661 ~ 2438109 (+)