RNA id: TU68684


Basic Information

Item Value
RNA id TU68684
length 2147
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G54969
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 27420529 ~ 27422675 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAGCAGACACATGGTCCTCatgttgtgtgcatgtgtcttcATCAAGAAACATGTTCTCCTAACAAGACTGCTTCCTAGACAAGGAAGCGGTCTTTCTTTTATATGTTATGAGAACATGTTTTGTCTGGAAAGGCAGTTGGATTTTACAACCTGAGAAAGTTCTGACCTGTTGGCTAACCGGATTTGTATCTCTGGACGACCAGAGCCTGCAGAAAAAgaataatgaaaaggaaaggaGCTCACACCGCTGTGCTGCTAGGCAGGAAATCCTTTACGGTCACGTTGGAGACTGGACCTGCTCCAGCTGCCTAAGAGAAATCTCTTGGTACTGTACGGCACTTAATAATCCCACCTGCTTGAGCATGCAACTCCGAATTTGTTGACGGGGATATCGGTTAAGACTCTTGGTACAATAATCCAGGCGCTTGTGCTGTTGTACTGATGAAGCCACAGAAAACATCTTTGTGTGGACACTTATGGTCAAAATTATGAACATGGGTAAATCTCAGCCAAGTCCTACAAGAAAAGGAAATCTATAATTATCCCGATGGCTTCTGTGATGGTCCAGGCCGTCATTCCCTAGTTAGTCTTACAAGCCAGTCTGATGCATTccacaaaatataatgtaccTGCCACATTGCCATatgcttatttaaatattgtttggcccatattttaatgtttctgaaaTGGTCTTTTGTGGTGGAGGatgcggggggaggggggctgtgAGGTCTAGAGTAATTTTCCAGCCGATGTGTTGATGGAATCGATTACACCATGTAAGATTGGGAGATTGAAACTCCCAAGTTTGGACAAAGATCATAATTCATCTAAGCAAAATTATTGCTTTAAGCTGGCGGTTAGACATTCTCTCATaagtattgtattttcattttatgatgaCCAAGTAATTTATGGGCCTAAAGTATgactataaatatgtattgatttttcttttgtttgtttgagttttttCGTTCGCTTTGTCTAGGCcgcattcattttgttttatctttcaaATGAAGGATGGTTGCCTCTAATTACAGTCCAGCAGGCAGCCAGTCTCTTCCCTATGCATGGGCTATAAACAGTAAAGCCCTGCCTGCCAGCTCTACTAAATGTAATGTCTATGCTGTTTCAAAAGCAGTTTTCAGAATACTATTAGCAACATTTTTCTTGTAGGCTCTCAAAGGGGAGGAATTTAGTTTACGCTGTATCCCTAAAAGTATTGGCACAGAAGAGAGCACTTCACAATTATATTGACCCCTTGGCAGTAATCCTGGAAGAACACTGTCCAAAACATCACAATAAATACTGGCAGTTCTGGTGCCCTTGACCGAAACAAGTCTTGTCCTGTTCTGTTGGTCATCTAGTGTGTCCTGGGCTTCGTGGTCCTGCCAATTGTTTGTAAAGTCACTGGCATGCACAGTGCATGTTGCCACAGATGTGGGCATTCGCTTATTTAGAAATCCTCCAATGCCCAGCTGCAGAATTCAAAATGGTCCACAAGCACATCAAATCTTAAAGCCACCAAGACCGCTGATACTGATCAGGTTTTAAAGTTTCTTTAGTGTGCCCTGTGCATCACATGCAGATACAACTGACAGCTCTACTTTAACTCCCTTGAAGCATGccagtttatttacatttcagaggaaggaataaataattgagtgcagtgtgctgtgtttgGGCATGTGTGTGCTGGTTCAGTATCTGTTGCATAATTACAAGCCCTAAAAGGTGCTCAGGTTCTACCtggacttgttttttttgttgctatttTAATCAATCTTGTATCTGCAAGAATGAAAGCAAAATGGTATGTccgtgtgtttatgtatttacagtgtCTGAGTGTGTCACCCGTTTGGATGCAGATGTGACCTGAATACCAGTAAAGGTTCTTGTACTGGACAGACTggtgtttgtgtatgtaaatgttgCTCCCCTGCCTTCACACTGGCCAACAAGGCCAGTCAACAAGGCCTGTATTGTGAAGAGGTTGTGAGGATTGTAACCGACTCCAaagattgttttccatttgacataatgttattttgtttgaccAATTGGAATCAATACTGTGGAATACTGCAGCTTTAAGtatgttggttttgtttttgtttagttttttgtaaagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68664 lncRNA upstream 97734 27322540 ~ 27322795 (+) True G54951
TU68663 lncRNA upstream 98339 27321949 ~ 27322190 (+) True G54950
TU68662 lncRNA upstream 100558 27319768 ~ 27319971 (+) True G54949
TU68661 lncRNA upstream 103372 27313955 ~ 27317157 (+) True G54948
TU68649 lncRNA upstream 302606 27110880 ~ 27117923 (+) True G54936
TU68713 lncRNA downstream 103392 27526067 ~ 27527494 (+) True G54997
TU68786 lncRNA downstream 200841 27623516 ~ 27626011 (+) True AMCG00009164
TU68950 lncRNA downstream 902684 28325359 ~ 28325659 (+) True G55184
TU68975 lncRNA downstream 956840 28379515 ~ 28380370 (+) True G55202
TU68976 lncRNA downstream 957717 28380392 ~ 28380755 (+) True G55203
AMCG00009153 mRNA upstream 4081 27403288 ~ 27416448 (+) True AMCG00009153
AMCG00009154 mRNA upstream 31227 27384768 ~ 27389302 (+) True AMCG00009154
AMCG00009150 mRNA upstream 42823 27364305 ~ 27377706 (+) True AMCG00009150
AMCG00009147 mRNA upstream 315638 27102496 ~ 27104891 (+) True AMCG00009147
AMCG00009144 mRNA upstream 332671 27077814 ~ 27087858 (+) True AMCG00009144
AMCG00009152 mRNA downstream 38555 27461230 ~ 27477658 (+) True AMCG00009152
AMCG00009162 mRNA downstream 70726 27493401 ~ 27494525 (+) True AMCG00009162
AMCG00009164 mRNA downstream 191580 27614255 ~ 27624432 (+) False AMCG00009164
AMCG00009163 mRNA downstream 237960 27660635 ~ 27671005 (+) True AMCG00009163
AMCG00009170 mRNA downstream 265210 27687885 ~ 27696664 (+) True AMCG00009170
TU68288 other upstream 1832919 25584892 ~ 25587610 (+) False AMCG00009108
TU68059 other upstream 2502666 24915029 ~ 24917863 (+) False AMCG00009088
TU68049 other upstream 2603995 24812618 ~ 24816534 (+) True AMCG00009085
TU67814 other upstream 3444623 23883317 ~ 23975906 (+) True G54263
TU67408 other upstream 6126628 21292241 ~ 21293901 (+) True G53917
TU68775 other downstream 190908 27613583 ~ 27617378 (+) False AMCG00009164
TU69158 other downstream 1343779 28766454 ~ 28777621 (+) False AMCG00009204
TU69199 other downstream 1506217 28928892 ~ 29011768 (+) True AMCG00009207
TU69266 other downstream 1680965 29103640 ~ 29106908 (+) True AMCG00009208
TU69269 other downstream 1680965 29103640 ~ 29106908 (+) False AMCG00009208

Expression Profile