RNA id: AMCG00009163


Basic Information

Item Value
RNA id AMCG00009163
length 2670
RNA type mRNA
GC content 0.60
exon number 19
gene id AMCG00009163
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 27660635 ~ 27671005 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGAGAGCATTGGAAGCTGCTGTTCAGCCTGAAGACGACCGTGGAGGGGCTGCTATCCACCAATAACCCCAACGTGTGGTCTCGCTATGGGGGGCTGCAGCGACTGCACAAGGACATGAACTATATCCTCAGTAATGGCCTCAAACACGACCAGGTGTACTGCAAGCAGAAGGATTATTGGCCTTTCGTGTGGTGTGTGCGCCTAATCAGTCCACAACTGGCTGTACATGTGCAGAAGTTCAACCAGCTGGAGCCAGTGTCCGGACAGGGGCTGTCCACGGGGGAGGGGCACAAAGCGGAGCGCTGGCTGCTGTACAGTCTGCAAATCCACTGCCTGTCTGCTCAGCTACGCCCCCTGCTGCGCTACCCCGACCACACGCGCAAGTTCTACAATGAGGGTGCATTCGTGCTTTCGCAGCCCCACGTCTCTGCCATGTTCCAGTGCCTGGAGGCGGTGGAGCAGAATGACCCACGATTGCTGGCCCTCATCGACACGGGCAGGcTATCCCACCTTCAGCAGTCTCCCATTGGTTTGCTCAAGAGTCAGAGTCTGTGTGTGCTGCCAGGGTCCGAGGTCAGAGCGGGCAGGGGGGTGAGCAGGCATTCATTCACCACTGTGCCCCAGTGTTACACGGCCTCACACTCCACAcccaggcagagagagacaggtgtctctctctgtgtcagtgcagCTGGAGCTCCTTGGGTGTGTGGAGATCAGCAGGAGAGCCCCCCCCAGTCCTCAGATCCACCCCCTCCTGCAGTCCCTCAAATCTCCCTGACGGTGCCCACCTCTCCGGTGCAGGGagtggaggtgggggaggggggcgaGGGGGTAGATTGCGACTTTGATGATGGACCTGAATACCTGGCCATTGGTAACCTGGGCCAACGGCGGCGCAGAGGCTCCAGCCAGAGCTCCACCCCTAGTGACCAGGAGGAGGGCTCTGTCGCTGGGTGTGGGCTGCTGGGCCCTCCCCCACGCCGGTCCTCATTCTCAGAGGGCCAGGGGGCGGATCGCACGGGGGTGGCGCGGCGGGGACACGCGCGCTCGTTCTCTGACACTGGAGTCACGCAGAAGCACAGCCAAGagtcGCAGGCAGAGGTGTGCGCATTGAAGGAGTGCGGTGCCTTTTCCCCACAGAGCAGTGAGAACAGCACACCTAGTTCTCTGTACATGGAGTCCGATGGGTCTCAGTATGGCAGCGTCTCAGAAAGCATGTTCCGCCGGCCTTTGGAGGGACAGAGCCTTATCAGCTACCTCTCTGAACAGGATTTTGGCAGCTGTGCTGACCTGGAGAAGGAGAACGCCCACTTCAGCATCTCGGAGTCTCTGATCGCGGCGATCGAACTCATGAAGTGTAACCTGCGTGTGCGTGGCGAGCTGGCGGgcgaggcggaggaggaggaggagaacgaCACCGAGATCCAGCAGCTCAAACAGAAGATCCGCATCCGCCGGCAGCAGATCCGCAGCAATGGCAGCGAGGGGGGTTCCCTGCTGGTGGTGTCGAGGAGTGGGCTTTCACTGTCCCTCGCCTCCCTCTTCTCAGATGCCGATATCAAGCGTACCGTGACgggcagcaccagcagcaggtCGTTTCTGAGCTCGGATTCGCTCACTCACTCGTTCCTGCAGTCAAACTCTGCTGAGTCGGTTGCCATGGGGTTACTGCGGCAGTTCGAGGGCATGCAGCTCCCTGCCGCCTCCGAGCTTGACTGGCTGGTCCCTGAGCAAGATGCACCTCAAAAGTTGCTGCCCATCCCTGACTCGCTGCCCATCTCCCCCGATGACGGTGAGCACGCTGACATCTACAAGCTCCGTATCCGGGTGCGAGGAAATCTGGAGTGGGCGCCCCCTCGGCCACAGATCATCTTCAACATCCACCCAGCGCCCAAGAGAAAGGTGGTGGTGGCCAAACAGAACTACAGATGTGCTGGCTGTGGGACCCGTATTGATCCagacTATATAAAGCGTCTGCGGTACTGTGAATACCTGGGCCGGTATTTCTGTCAGTGTTGCCATGAGAATGCGCAGGCCGTGGTCCCCGGGCGAGTGCTGCGTAGGTGGGACTTCAGTAAGCAGCCCGTCAGCAACTTTGCTCGCGACCTGCTTGGCAAGATCGCTGGGGACCCCCTCTTCAACCTGGACGACATCAACAGCGCCCTCTACAGGAAGGTGAAGGCGCTGGAGCAAGTGCGGctCCTGAGGGTTCAGCTGTTCCACATGAAGAATATGTTCAAGACCTGCCGCCTGGCCAAAGATGTTTTGGATCAGTTTGACTGTGTCCCAGGTCACCTGACGGAGGACCTGCACCTATTCTCACTCAATGACCTCAGTGAGGTGCGCCGCGGAGAGCTGCCCACCCGTCTGCGAGAGCTATTGCGACTGGGTTCTATACATGTTGCTGGCTGTGTGCTGTGCCAGGCAAAGGGGTTTGTCTGCGAGTTCTGTGGGAATGACAAGGACATCATCTTCCCCTTTGAGCTGAACAAGTGCCAACGCTGTGAAGACTGCAAGGCGTGTTACCATCGGGTGTGTTTTCGGGGGCAGCAGGAGTGTCCGAAGTGCCTGCGACTGGCCAAGAGGAGGGAGCGGCTGGCGAGGCGGAATATGGAGGAGCAGCAGGACCAGGGGGAGGACGAAGGAGGGGGCACACCAGGGGGAGCC

Function

GO: NA

KEGG:

id description
K19330 RUBCN; run domain Beclin-1 interacting and cysteine-rich containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68786 lncRNA upstream 34624 27623516 ~ 27626011 (+) True AMCG00009164
TU68713 lncRNA upstream 133141 27526067 ~ 27527494 (+) True G54997
TU68684 lncRNA upstream 237960 27420529 ~ 27422675 (+) True G54969
TU68664 lncRNA upstream 337840 27322540 ~ 27322795 (+) True G54951
TU68663 lncRNA upstream 338445 27321949 ~ 27322190 (+) True G54950
TU68950 lncRNA downstream 654354 28325359 ~ 28325659 (+) True G55184
TU68975 lncRNA downstream 708510 28379515 ~ 28380370 (+) True G55202
TU68976 lncRNA downstream 709387 28380392 ~ 28380755 (+) True G55203
TU68977 lncRNA downstream 709975 28380980 ~ 28381299 (+) True G55204
TU68978 lncRNA downstream 711995 28383000 ~ 28383503 (+) True G55205
AMCG00009164 mRNA upstream 36203 27614255 ~ 27624432 (+) False AMCG00009164
AMCG00009162 mRNA upstream 166110 27493401 ~ 27494525 (+) True AMCG00009162
AMCG00009152 mRNA upstream 182977 27461230 ~ 27477658 (+) True AMCG00009152
AMCG00009153 mRNA upstream 244187 27403288 ~ 27416448 (+) True AMCG00009153
AMCG00009154 mRNA upstream 271333 27384768 ~ 27389302 (+) True AMCG00009154
AMCG00009170 mRNA downstream 16880 27687885 ~ 27696664 (+) True AMCG00009170
AMCG00009169 mRNA downstream 61550 27732555 ~ 27733810 (+) True AMCG00009169
AMCG00009173 mRNA downstream 86218 27757223 ~ 27768167 (+) True AMCG00009173
AMCG00009175 mRNA downstream 171528 27842533 ~ 27860126 (+) True AMCG00009175
AMCG00009176 mRNA downstream 430685 28101690 ~ 28122032 (+) True AMCG00009176
TU68775 other upstream 43257 27613583 ~ 27617378 (+) False AMCG00009164
TU68288 other upstream 2073025 25584892 ~ 25587610 (+) False AMCG00009108
TU68059 other upstream 2742772 24915029 ~ 24917863 (+) False AMCG00009088
TU68049 other upstream 2844101 24812618 ~ 24816534 (+) True AMCG00009085
TU67814 other upstream 3684729 23883317 ~ 23975906 (+) True G54263
TU69158 other downstream 1095449 28766454 ~ 28777621 (+) False AMCG00009204
TU69199 other downstream 1257887 28928892 ~ 29011768 (+) True AMCG00009207
TU69266 other downstream 1432635 29103640 ~ 29106908 (+) True AMCG00009208
TU69269 other downstream 1432635 29103640 ~ 29106908 (+) False AMCG00009208
TU69299 other downstream 1502134 29173139 ~ 29174700 (+) True AMCG00009220

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00040753 False 2823 mRNA 0.56 20 NC_007133.7 35275468 ~ 35312649 (+)